Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., Ribosomal large subunit pseudouridine synthase C from Acinetobacter radioresistens SK82

 Score =  104 bits (260), Expect = 4e-27
 Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 16/253 (6%)

Query: 308 RSPKSEIRQHKKFYPACQSKCQPILAHMLEGMPLEDNPLLSNPAQGQDITIVYQDDAIVV 367
           R  K  I+   K     Q +  PI     +  P+   P+    AQG    ++Y+D+ ++V
Sbjct: 50  RVNKKRIKAESKLAIGDQVRVAPIRFEPKDETPV---PVSDKVAQGLLSRVIYEDEGLMV 106

Query: 368 VNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFALTRRANKQLQ 427
           VNKP+      G  V   ++  L+A  T  + +  +HR+D  TSGL++ +  R   K LQ
Sbjct: 107 VNKPSGIAVHGGSGVAYGLIEGLRAA-TGKKYLELVHRIDRDTSGLVMISKKRSVLKTLQ 165

Query: 428 KQFISRAVQKRYVALIEGKLSETQGEIQLPLCG-DLDDRPRQKVCWQQGKPALTHWETVQ 486
                  ++K Y A+++G++S  Q  I  PL   +L +  R+    ++GK + T W   +
Sbjct: 166 DLLREHKIKKTYAAIVKGQVSLDQQLIDAPLYRYELANGERRVRVSKEGKDSKTQWNVAE 225

Query: 487 VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQ-------DKRLFLHAEQ 539
              + T VY  P +GRTHQ+RV   H L +  P+VGDD YG +        +RL LHA +
Sbjct: 226 RFMHATLVYASPLSGRTHQIRV---HGLSIGHPLVGDDKYGHETEYKGPKPRRLCLHAIR 282

Query: 540 LSF-AHPYTKQPM 551
           L    +P  + P+
Sbjct: 283 LEIPGYPTIEAPL 295