Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., multidrug efflux MFS transporter EmrD from Escherichia coli ECRC101

 Score =  155 bits (392), Expect = 2e-42
 Identities = 108/390 (27%), Positives = 195/390 (50%), Gaps = 20/390 (5%)

Query: 14  MLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDA 73
           +L+ ++++A GQ+  +IY+P++  ++RDL V + + Q ++  +LL +G SQLFYG +SD 
Sbjct: 10  LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR 69

Query: 74  VGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGF 133
           VGRRP  L+G  I++L T++ V  S     L     +QG+G G   V+ R++ RD Y+  
Sbjct: 70  VGRRPVILVGMSIFMLATLVAVTTSS-LTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 128

Query: 134 HLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILPETLP 193
            L  A S L++   + P++AP++GG L    +W++ ++F+L+    +       +PET P
Sbjct: 129 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 188

Query: 194 YPKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILP----FLLQKQLGMT 249
               R +   ++ +Y  L  N    S  +   L  +  L  ++        L+   LG++
Sbjct: 189 VDAPRTR---LLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLS 241

Query: 250 AADYGSTLIIPSSGLLLGSVLVNMLTSRFSVRQLLGCAISLMVFAGLWLLLTEF----SV 305
           +       I+P      G+        RFS   L+  ++   + AGL + + ++    +V
Sbjct: 242 SMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFGVMNV 299

Query: 306 FNLIWAFTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGGYLVEHWV 365
           + L+          G+ FPLAT+  + P    AG   AL G +Q   +G+L         
Sbjct: 300 WTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ 359

Query: 366 TSQNAMGVFYILVG--ITMLSVLIATKKAH 393
           T Q ++G+   L+G  I +  + +AT+ +H
Sbjct: 360 TGQGSLGLLMTLMGLLIVLCWLPLATRMSH 389