Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., multidrug efflux system protein from Escherichia coli BL21

 Score =  134 bits (338), Expect = 4e-36
 Identities = 105/391 (26%), Positives = 184/391 (47%), Gaps = 17/391 (4%)

Query: 14  MLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDA 73
           ++ +  ++     G+ +YL  LP I+ DL   +A   +  +++L G   + LF G ++D 
Sbjct: 5   LICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKVADR 64

Query: 74  VGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGF 133
            GR+P  + G  ++++ +V C +       L  GR LQGLGAG   V+  ++LRD+ D  
Sbjct: 65  SGRKPVAIPGAALFIIASVFCSLAETSTLFLA-GRFLQGLGAGCCYVVAFAILRDTLDDR 123

Query: 134 HLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILPETLP 193
              K LS L+    I+P++APVLG  +     WQS+F  + +   A+  L L IL ET P
Sbjct: 124 RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFWAMAMMGIAVLMLSLFILKETRP 183

Query: 194 -YPKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILPFLLQKQLGMTAAD 252
             P    + R      ++ L N+   S      LS    L  ++  P LL + +G    +
Sbjct: 184 ASPAASDKPR----ENSESLLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFERGE 239

Query: 253 YGSTLIIPSSGLLLGSVLVNMLTSRFSVRQLLGCAISLMVFAGLWLLLTEFSVFNLIWAF 312
           Y + + + +   +  S         F  R L+  +  L + AG+ L ++     +L +  
Sbjct: 240 YATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQVLFLAAGITLAVSPSHAVSL-FGI 298

Query: 313 TWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGGYLVEHWVTSQNAMG 372
           T +     + F +A +  L P   +AG  S+      +GIA + G  L   W+ +   +G
Sbjct: 299 TLICAGFSVGFGVAMSQALGPFSLRAGVASS-----TLGIAQVCGSSL-WIWLAAVVGIG 352

Query: 373 VFYILVGI----TMLSVLIATKKAHSQPSAA 399
            + +L+GI    +++S+L+    A  +P AA
Sbjct: 353 AWNMLIGILIACSIVSLLLIMFVAPGRPVAA 383