Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1059 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  228 bits (581), Expect = 1e-63
 Identities = 153/441 (34%), Positives = 233/441 (52%), Gaps = 17/441 (3%)

Query: 168  RSQSLINQLRHEISHDNLTGLMNRNDLAEKLTALVQEDRH---HFTLAFLDIDEFRSIND 224
            RS++ I  L H   HD LT L NR+   E+L   +Q+ +       + F+D+D F++IND
Sbjct: 616  RSEARIRFLAH---HDVLTELPNRSLCIERLGLALQQAQRKGQRVGVLFIDLDRFKNIND 672

Query: 225  LHGHYLGDLVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTD----REPMKICQTILNKL 280
              GH++GD +L+ VA  + QAV       R+  DEF  +  +    +E + + +  L  L
Sbjct: 673  SLGHHVGDALLRSVAARMSQAVRPGDTVSRLGGDEFVVVLNNVADGQEILSLVERRLISL 732

Query: 281  AQDYIDQD-RRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLS 339
             +   D D   + +S S+GI  Y  +  + D L+ +A +A+ + K +     RF+   ++
Sbjct: 733  IRQPHDIDGAEIHVSCSVGIAVYPDDAQDIDALMRHADVAMYQSKASGRDTARFFTPEMN 792

Query: 340  NQYYRRTQIIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTP 399
             +  +R Q    L S L   I + EL +  QP +  H       E L RW S+ LG V P
Sbjct: 793  ERAQQRLQ----LESSLRHAIERDELSLHYQPRIDAHSGELICVEALLRWQSAELGQVRP 848

Query: 400  LEFIEAAEQSGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHL 459
             +FI  AE+SG IV  G  ++E AC       +     IR++IN SA +L      LE L
Sbjct: 849  AQFIPIAEESGQIVAIGAWVIEQACAQHAAWRRDGLGAIRVAINMSALQLRDGG-LLEVL 907

Query: 460  LKTIKAYGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIH 519
               I  YG    +  IELTE+ L+  A +    L  L+ LG  +++DDFGTGYSSLNY++
Sbjct: 908  RGAIALYGVSPGDLEIELTESTLMDAAEQSLVQLHALKSLGVMLSIDDFGTGYSSLNYLN 967

Query: 520  SYPIDCIKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGC 579
             +PID +KID +F+  +L + T  +I   II L + L L +VAEGVE ++  D L    C
Sbjct: 968  RFPIDKLKIDRSFIHKMLGDPTDMAIARAIIGLGHTLGLRVVAEGVERREEADTLRAARC 1027

Query: 580  EQIQGYYFSRPDLPSVMIERW 600
            +++QGY  SRP +P+  +  W
Sbjct: 1028 DELQGYLISRP-MPAGKLAGW 1047