Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  219 bits (558), Expect = 4e-61
 Identities = 142/424 (33%), Positives = 231/424 (54%), Gaps = 14/424 (3%)

Query: 175 QLRHEISHDNLTGLMNRNDLAEKLT-ALVQEDRHHFTLA--FLDIDEFRSINDLHGHYLG 231
           QL    + D LT L NRN   ++L  ALV   R    +A  F+ +D F++IND  GH++G
Sbjct: 152 QLWQRSNFDPLTELPNRNLFLDRLLQALVLAGREGSKVAMLFIGLDGFKNINDSLGHWIG 211

Query: 232 DLVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTD----REPMKICQTILNKLAQDYIDQ 287
           D VL+  A   +  + +   A R   DEF  + +      E   + +++L  L + ++ +
Sbjct: 212 DKVLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGVRATAEVEAVIRSVLEVLQEPFVVE 271

Query: 288 DRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQ 347
              + IS SIG+  + G+  + D L+ NA+ AL++ K+      RF+   +      R Q
Sbjct: 272 HHHILISCSIGVCMWPGDGEDVDSLMRNATAALQQAKQAGRNTFRFFTPAMD----ARAQ 327

Query: 348 IIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAE 407
               L  ELS  + Q E ++V QP+V       +  E L RW++  LGVV+P +F+  AE
Sbjct: 328 ARSRLADELSGALSQGEFHLVFQPLVDVKSGKVNAAEALLRWHNRYLGVVSPDQFVPLAE 387

Query: 408 QSGLIVEFGERILELACIAKQELEQGIDQ-KIRLSINCSADELTHSNRYLEHLLKTIKAY 466
           + GLI   GE +L  AC  +  + QG+   +I +++N S  +    +  +  + + ++  
Sbjct: 388 EIGLIRPIGEWLLTAAC-REALVWQGMGLGEINIAVNISPRQFQQGD-IVGIIRRALEDT 445

Query: 467 GFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCI 526
                  TIE+TE +LLS   E+ + +  +R LG  +++DDFGTGYSSL+Y+ S+P+D +
Sbjct: 446 RLPPWLLTIEITEGLLLSNGEEILAKMEAIRTLGVSLSVDDFGTGYSSLSYLKSFPVDVL 505

Query: 527 KIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYY 586
           KID +F+ ++  +    ++V  II L + L L++VAEGVE +Q LD +   GC+  QGYY
Sbjct: 506 KIDRSFIADMGDHSDDATMVEAIIALGHSLHLEVVAEGVETKQQLDFITAQGCDVAQGYY 565

Query: 587 FSRP 590
           FS P
Sbjct: 566 FSPP 569