Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  212 bits (539), Expect = 4e-59
 Identities = 128/349 (36%), Positives = 198/349 (56%), Gaps = 7/349 (2%)

Query: 201 ALIGILLVAALSSWLLAGIIVTPIRQLQQTVREIA--KGNLLVKAQEEGNNEITLLARDV 258
           A++G++LV     WL+A  +  PI  +   + +IA  +G+L  +   +  +E+  LA   
Sbjct: 372 AVVGLILV-----WLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDELGQLAGWF 426

Query: 259 NATVTQLRQTVESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTA 318
           N  + +L+  +  + R   D    + + A + TQ S   +Q+ ++V+QVA+A +++ +TA
Sbjct: 427 NRFLDKLQPIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASHEMSATA 486

Query: 319 QSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIG 378
           Q V   A  A  AA+ A+Q     L + E +      +A  +  A   V  L   SE+IG
Sbjct: 487 QDVARSAAQAAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLAANSEKIG 546

Query: 379 NVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIE 438
           +V EVIR I+EQTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RTQ S +E + +IE
Sbjct: 547 SVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETRLVIE 606

Query: 439 ELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQ 498
            LQN +     SM +S    + +     +   +L +I  +++ +  +N Q+A+A+EEQS 
Sbjct: 607 HLQNGTEAVVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASAAEEQSA 666

Query: 499 VTKDINRNLSNIYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV 547
           V ++IN N++ I ++         +SA  S  L+ LA QQ   +  FRV
Sbjct: 667 VAEEINNNVATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV 715