Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  222 bits (565), Expect = 3e-62
 Identities = 144/421 (34%), Positives = 231/421 (54%), Gaps = 9/421 (2%)

Query: 115 LTQAMQRYVDYSIQTMIPLLNIEHSDQEKDERFTAQYEQATAEYRKVGNEMIKAIDVLSN 174
           L Q    Y+  S + ++ LL+    DQ +     AQ   +  E  +   E+I+ +   +N
Sbjct: 117 LDQIWPTYISSS-ERIMALLDGGQVDQAR-----AQLNTSNNELFRQARELIRVMIESNN 170

Query: 175 RLNQVAMTTIDESEHEHDSVMSQSTFALIGILLVAALSSWLLAGIIVTPIRQLQQTVREI 234
           R  +      DE  +   S ++     ++   L+A +   L+  +I  PI Q  Q+ + I
Sbjct: 171 RQIKEGAVAADELRN---SALTWMISGIVLAFLIAIIIGVLITRLITRPIAQAVQSAQRI 227

Query: 235 AKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDVASASTELATVMTQAS 294
           A+G+L      E  +E   L   ++     L+ T+  +   S  +ASA+ EL+ V  ++S
Sbjct: 228 AQGDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESS 287

Query: 295 VNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATA 354
               ++  E++Q A+AVNQ+ +    V  +A S   A++QA   A    +  E++    +
Sbjct: 288 RGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMS 347

Query: 355 KMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAV 414
            M  ++ ++ Q V  L  Q   IG V +VIR I++QTNLLALNAAIEAARAGE GRGFAV
Sbjct: 348 SMVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAV 407

Query: 415 VADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTE 474
           VADEVR LA RTQ ST +I+ +I ++Q  ++ A ++M+ SL+     Q+LA     +L  
Sbjct: 408 VADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQR 467

Query: 475 INHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAASHELSDL 534
           I  S++ + + N  +A+ASEEQ+QV ++++RNL NI +L +Q   G  Q+ A+S +LS L
Sbjct: 468 ITASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRL 527

Query: 535 A 535
           A
Sbjct: 528 A 528