Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 737 a.a., TonB-dependent hemin, ferrichrome receptor from Variovorax sp. SCN45

 Score =  172 bits (435), Expect = 7e-47
 Identities = 184/733 (25%), Positives = 316/733 (43%), Gaps = 96/733 (13%)

Query: 30  EVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVT----------G 79
           EVVV+ +R EQ   ++  S  V+  + +E +  T++ DA+   P VSV           G
Sbjct: 40  EVVVSGSRSEQSRDDLPVSTEVISRDDIESKQITDIRDAVRDLPNVSVKRAPARFGLAQG 99

Query: 80  GAGRPQN--ITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQIQVVKG 137
             GR  N    IRG+ GNR+ ++ DGI++   Y  +   + +GR+ F +S V++I+++KG
Sbjct: 100 NTGRDGNAGFNIRGLDGNRVLLLTDGIRTPRSYVFSA--NAFGRDYFDISLVERIEIIKG 157

Query: 138 ASSTLYGSGAIGGVVIIESKAPEDYLYH-RDYYVDAALTYSGISNRYQGNHALAMRHGDG 196
            +S LYGS  + G+V   ++ P  YL   + +   A + YSG  N   G   LA +  D 
Sbjct: 158 PASALYGSDGLAGLVNFITRDPSSYLRDGKTFGGSANIGYSGDDNGTHGGVTLAGKANDT 217

Query: 197 -EALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLKTHLEYFDDYAKRR 255
            + L++ +  +     N      N   +      +     N AL  K  L      A +R
Sbjct: 218 MQWLISANMGRASALENMGT---NNAANADRTTPNPQRDRNKALLAKVILT---PNADQR 271

Query: 256 EGTS--SIQKDDKWDLVSFYEYQRSQTRLASVGADYTANLSWMDTLEGKFYWRSTENITQ 313
            G +   I K  ++DL+S    +      + +G +  ++L               +  T 
Sbjct: 272 HGFTFEHIDKTSRYDLLSGLS-KPPYASTSVIGLNAKSDLQ-------------RDRFTY 317

Query: 314 TNRLMANDR---SGAGILSYRR----------------ELRDEGFNDEALGATLNAQKEW 354
             RL  +     S   ++SY++                  RD  +++      L A K  
Sbjct: 318 DGRLRIDSAVADSLLAVVSYQKAKSREFIYEDRYTAADRTRDVTYDEATWQFGLQADKTV 377

Query: 355 QQGEWLHQFAYGMSVDGHDYQRPKSIRRMESS----GDDLQADEPFAPAREYRFGVYGQD 410
           + G+W  +  YG      DY R  ++  +++       +    + F   RE     Y QD
Sbjct: 378 RMGDWAQKITYGF-----DYTRT-NVENLQTGLVPPAGETYPLKRFPDTRETSSAFYVQD 431

Query: 411 NLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLS 470
             +   W++  G+RFD   L  K      G + V++  S  SP   + ++  P+W+ Y +
Sbjct: 432 EFIHDRWSITPGIRFDRFSLDAKQAG--FGAQAVSLSGSAVSPKLGVLFRATPQWSIYGN 489

Query: 471 YNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAV 530
           Y  GF+AP+   A+  ++     ++ +   PN  L+ E S + ELG +   G   + VA 
Sbjct: 490 YASGFKAPN---AFQVNNFFENVISGYKTIPNPNLKPEKSQNIELGMRGRTGVLSYDVAA 546

Query: 531 FYSIFDNFID-VKQVG--YDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDR---WSVEN 584
           F   + + I+  +QVG  + + T     Q  NI   +  G E+       D    +SV  
Sbjct: 547 FTGDYKDLIENDRQVGGVFGSRTNPATFQSVNIGRARISGFEIKGELDFTDNGNGFSVPF 606

Query: 585 KLGYVDGKD-GENQYVRTLTPLEGSVQLNYQRERW----DA--YSRLNWASAMSRVPT-C 636
             G   G+D   N+ + ++ P + ++ + YQ   W    DA  +SR  W+      PT  
Sbjct: 607 AYGQTRGRDRTNNRPLNSIDPSKAAIGIKYQAPVWMVRLDAVNHSRKKWSDI---DPTEV 663

Query: 637 TTEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVAGVTPSDTL 696
           TT    +T  ATT     +D+   ++    L  + +V NL ++ Y  + DV G+T + T+
Sbjct: 664 TTGTQFQTPAATT-----FDVSAQWRIRKDLRLNASVTNLTNKRYWMWSDVRGLTSTSTI 718

Query: 697 YS--TEPGRYFTV 707
               T+PGR F V
Sbjct: 719 RDAYTQPGRSFNV 731