Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., iron-regulated outer membrane virulence protein from Vibrio cholerae E7946 ATCC 55056

 Score = 77.0 bits (188), Expect = 3e-18
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 4/154 (2%)

Query: 4   SPVSAAV-LSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGK 62
           SPVS +V L ++ +  A A+      E +VVTA    Q +     S++V+  E LE +  
Sbjct: 7   SPVSLSVTLGLMFSASAFAQDATKTDETMVVTAAGYAQVIQNAPASISVISREDLESRYY 66

Query: 63  TELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRN 122
            ++ DAL   PGV+VTGG G   +I+IRGM  N   I+ DG +        + +      
Sbjct: 67  RDVTDALKSVPGVTVTGG-GDTTDISIRGMGSNYTLILVDGKRQTSRQTRPNSDGPGIEQ 125

Query: 123 TF--SLSNVKQIQVVKGASSTLYGSGAIGGVVII 154
            +   L  +++I+V++G  STLYGS AIGGV+ I
Sbjct: 126 GWLPPLQAIERIEVIRGPMSTLYGSDAIGGVINI 159



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 58/255 (22%), Positives = 88/255 (34%), Gaps = 32/255 (12%)

Query: 449 SEWSPSASISYQWHPEWNTYLSYNHGFRAPS-------YDKAYGASDHSFVPLTPFIIKP 501
           S +SP     +   P W      + GFRAP        + +  G  +          I  
Sbjct: 394 SHFSPRVYGVWNLDPLWTVKGGVSTGFRAPQLREVTPDWGQVSGGGN----------IYG 443

Query: 502 NNKLRAETSDSFELGSKYDNGQ-TQFYVAVFYSIFDNFI-------DVKQVGYDNATGSV 553
           N  L+ ETS + EL   Y  G      +  F++ F + I       ++   G  N  G+ 
Sbjct: 444 NPDLKPETSINKELSLMYSTGSGLAASLTAFHNDFKDKITRVACPANICTAG-PNQWGAA 502

Query: 554 IQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQYV-RTLTPLEGSVQLN 612
                NI   +TYGAE ++   + +   + +   Y   +     +  R L  L     L 
Sbjct: 503 PTYRVNIDEAETYGAEATLSLPITESVELSSSYTYTHSEQKSGNFAGRPLLQLPK--HLF 560

Query: 613 YQRERWDAYSRLN-WASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASF 671
                W    RLN WA+   R      E G   +      +   D G+ Y      +   
Sbjct: 561 NANLSWQTTDRLNSWANLNYRGKEMQPEGGASNDDFIAPSYTFIDTGVTYALTDTATIKA 620

Query: 672 NVVNLLDRE--YTRY 684
            V NL D+E  Y  Y
Sbjct: 621 AVYNLFDQEVNYAEY 635



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 71  QEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVK 130
           Q     VTG      ++ + G T  R     D  +   GYG   +     +  + L+   
Sbjct: 188 QSANFFVTGPLSDALSLQVYGQTTQR-----DEDEIEHGYGDKSLRSLTSKLNYQLNPDH 242

Query: 131 QIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQGNHALA 190
           Q+Q+  G S+                +  E+ +           T S   N+Y+ NH   
Sbjct: 243 QLQLEAGVSA----------------QDRENNVGKSAQSSGCRGTCSNTDNQYRRNHVAV 286

Query: 191 MRHGDGEALLTID-YWQGEETRNFNQDL 217
              GD + +   D Y Q EE  N ++++
Sbjct: 287 SHQGDWQDVGQSDTYLQYEENTNKSREM 314