Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., vitamin B12 transporter BtuB from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (262), Expect = 7e-27
 Identities = 169/720 (23%), Positives = 277/720 (38%), Gaps = 169/720 (23%)

Query: 1   MKLSPVSAAVLSVLAA-GFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEK 59
           M+ S ++ A+ S+L    + HA  E    E VVVTANR EQ  S     V ++  + +E+
Sbjct: 1   MQKSALAIALASLLTPISYLHAN-EAQPQETVVVTANRFEQKASSTLADVEIITRQDIEQ 59

Query: 60  QGKTELYDALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQSADGY-GAADIN 116
                L + L +  GV +T  GG G+  ++ +RG + +++ ++ DGI+ A    GA D N
Sbjct: 60  TQAKTLPELLRRLTGVQITQNGGRGQLASLFVRGTSSDQVLVLVDGIRFARAAKGAVDFN 119

Query: 117 DKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDY--------LYHRDY 168
                    L+ V +I+ V+GA ++LYGS AIGGV+ I +KA            L   DY
Sbjct: 120 Q------IPLTYVDRIEYVRGARASLYGSEAIGGVINIITKARSQQQGTTVSAGLGSLDY 173

Query: 169 YVDAALTYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYN-REVDGYNL 227
              +  +   I  + Q N AL      G                     YN R V G N 
Sbjct: 174 QELSIASGVAIGEKGQMNVALGTESDKG---------------------YNVRPVPGVND 212

Query: 228 GFSHHYWLNDALRLKTHL--EYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASV 285
           G  H +  ++AL    H   E +  +A  R   +  Q D+ +    + E ++      ++
Sbjct: 213 GDRHGFRSDNALLGYVHQFDESWSLFANARAYENIYQYDNSYGTRDYKEAEKDDLSF-TI 271

Query: 286 GADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALG 345
           G  Y +   W+  L+     + + + TQ+    ++                         
Sbjct: 272 GTQYQSE-RWVSELQLTTQKQKSWDYTQSKGKYSDTSDNL-------------------- 310

Query: 346 ATLNAQKEWQQGEWLHQFAYG---MSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREY 402
                  E +  +W++++          G D++        + S  D  AD+ F  +   
Sbjct: 311 -------EQRNIQWINRYLVNDVWTFAGGVDWR--------DESYIDKTADKEFDRSNTA 355

Query: 403 RFGVYGQDNLLLGDWTLAAGLRFDA-QKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQW 461
            F V   +      W L A LRFD  Q+   + T  I                 ++ YQ+
Sbjct: 356 AFAVVAAE---WQQWLLEASLRFDDNQEYGSQTTHNI-----------------ALGYQF 395

Query: 462 HPEWNTYLSYNHGFRAPS----YDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGS 517
            PE+    SY   F+AP+    YD +YG                N  L+ E +DS EL  
Sbjct: 396 IPEFGVKASYGSAFKAPNLYQQYDPSYG----------------NVNLQPEDADSAELS- 438

Query: 518 KYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVI------QQYQNIAGVKTY-GAEM 570
                        FY +F   I     GYD    ++I      + YQN+ G     G E 
Sbjct: 439 -------------FYGLFSG-IKWSITGYDYKINNLIDYNSTTKNYQNVIGESNIKGVEF 484

Query: 571 SVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAM 630
           +          V+++L  VD KD ++   +T   L+   +  Y+     A+ +++W+   
Sbjct: 485 TAEFATG---IVQHQLS-VDLKDADDSKGKT---LQRRAEHMYKWNALVAFEQVDWSIGY 537

Query: 631 SRVPTCTTEQGKE---------TECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREY 681
             V       GK          T+  T   +   D  ++Y      + S  + NLLD+EY
Sbjct: 538 QYV-------GKRPDLDYNTYPTQNITLDAYSLVDTSVSYYVTDSTTISARIDNLLDKEY 590