Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., Outer membrane vitamin B12 receptor BtuB from Sphingobium sp. HT1-2

 Score = 87.8 bits (216), Expect = 1e-21
 Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 14/227 (6%)

Query: 1   MKLSPVSAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQ 60
           MK+  +S  ++++LAA  A A+ + +  +++VVTA+ I QP  EV  ++ V++ +T+  +
Sbjct: 1   MKMLGIS--LIALLAATPALAQ-DLAQDDDIVVTASGIAQPRDEVGQAITVIDADTIRTR 57

Query: 61  GKTELYDALNQEPGV--SVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDK 118
              ++ D L   PGV  S  G  G    +++RG    +  ++ DG++  D  G   I D 
Sbjct: 58  QAVDVVDLLATTPGVRFSRNGSTGGVTGVSLRGAETTQTLVLIDGVKVNDPSG---IGDG 114

Query: 119 YGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSG 178
           Y        N+++I+V++G++S +YGS AIGGVV + + AP +      + V+A+  Y G
Sbjct: 115 YDFGHLLTGNIRRIEVLRGSNSVVYGSQAIGGVVNVMTGAPSE-----GFEVNASADY-G 168

Query: 179 ISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGY 225
            S+       ++  HG     + + Y+  +   +  +     E DGY
Sbjct: 169 YSDTLNAKADVSGTHGAVSGGVGVAYFNTDGISSVGRSFGGVEKDGY 215



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 466 NTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELG--SKYDNGQ 523
           N  LSY  GF+APS  + Y                 N+ LR E S S+++G     D  +
Sbjct: 404 NIRLSYGEGFKAPSLYQLYDT------------YSGNSALRPERSKSYDIGFDQSLDGDK 451

Query: 524 TQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVE 583
               +  F     N     Q+ YD AT      Y N+   +  G E ++  +  +  +V 
Sbjct: 452 AMLSLTAFRRDTRN-----QINYDYAT----YTYGNLDRTRAKGVEATLTLKPVEALTVA 502

Query: 584 NKLGYVDGKD 593
               YVD +D
Sbjct: 503 ASYSYVDARD 512