Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins from Sphingobium sp. HT1-2

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 7   SAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELY 66
           +AA++++ +A  A A        ++VVTA   EQ + +   S++V+  ETL+     E+ 
Sbjct: 10  TAALVALTSAQQALAAEADQDSNQIVVTAAGREQEVRDAPASISVITRETLDAMPYREVT 69

Query: 67  DALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAAD-INDKYGRNTFS 125
           DAL + PGV+VT G G  ++I+IRGM      I+ DG + +      +  N   G     
Sbjct: 70  DALMEIPGVTVTPGEGNSRDISIRGMAPQYTLILVDGKRLSSRESRTNGGNVSEGGLLPP 129

Query: 126 LSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDY 162
           L  +++I+VV+G  S+LYGS A+GGVV I ++   D+
Sbjct: 130 LEAIERIEVVRGPMSSLYGSDAMGGVVNIITRRISDH 166



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 57/258 (22%), Positives = 90/258 (34%), Gaps = 34/258 (13%)

Query: 451 WSPSASISYQWHPEWNTYLSYNHGFRAPSYDKA---YGASDHSFVPLTPFIIKPNNKLRA 507
           W+P     +   P       Y+ GFRAPS  +    +G +           I  N  L A
Sbjct: 396 WTPRVYAVWNITPSLTLKGGYSQGFRAPSLRQTIPDWGQTSRGGT------IYGNPDLEA 449

Query: 508 ETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNA---------TGSVIQQYQ 558
           ETS + E    +        V  + + F++ I         A          G     Y 
Sbjct: 450 ETSRTIEAALLFSRNGFNASVTAYDTRFNDKITRVTCEVAGAWCVDEPLSSIGRPPTTYV 509

Query: 559 NIAGVKTYGAEMSV----MHRLDDRWSVENKLGYVDGKDGEN--QYVRTLTPLEGSVQLN 612
           N+   +  G E+SV     H L  R +    L   +   G N    +      + S  LN
Sbjct: 510 NVDKARVRGLEVSVDVPLTHTL--RLNATGTLTDSEQLSGANIGAALNDTPKQQASASLN 567

Query: 613 YQRE-RWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASF 671
           ++ + R+ A+ R     A+ R     TE         +  +   D+G +Y+     +   
Sbjct: 568 WRPDKRFSAFVR-----AVYRGEEAVTEAQISGNNIVSPDYTVVDMGASYKITPAFTVHA 622

Query: 672 NVVNLLDREYTRYQDVAG 689
            V NLLD+      D+AG
Sbjct: 623 GVQNLLDKRLN--YDMAG 638