Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 710 a.a., putative TonB-dependent receptor from Pseudomonas putida KT2440

 Score = 86.3 bits (212), Expect = 5e-21
 Identities = 160/717 (22%), Positives = 275/717 (38%), Gaps = 159/717 (22%)

Query: 34  TANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQNITIRGMT 93
           +A +I+ PL ++  +V V+    ++ QG   + D L   PG+ ++ G G+   +TIRG +
Sbjct: 57  SAMKIDAPLRDIPQTVNVVPESVIKDQGAQSMEDVLKNVPGIGLSNGDGQRDQVTIRGFS 116

Query: 94  GNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVI 153
                 + DG++          +  Y R+   LSN+++++V+KG ++ LYG G+ GG++ 
Sbjct: 117 AIGDMYI-DGVRD---------DALYFRD---LSNIERVEVIKGPAAVLYGRGSSGGLIN 163

Query: 154 IESKAPEDYLYHRDYYVDAALTYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNF 213
             SK P  +   R+  ++     S    R Q +   A    +    +T  +   E++  F
Sbjct: 164 SISKKP-SFTPKREVGMNVD---SEGKRRTQFDTGWADPQSNQAYRVTGAF---EDSDTF 216

Query: 214 NQDLYNREVDGYNLGFSHHYWLNDALRLKTHLEYFDDYAKRREGTSS-------IQKDDK 266
             D Y   +D   +  S ++ L+D L L     Y  D      G  +       + +D +
Sbjct: 217 RDDGY---IDRKAIAPSAYFRLSDDLELNLGATYLYDKRLIDFGIPALGNRPVDVDRDKR 273

Query: 267 WDL-VSFYEYQRSQTRLASVGADYTANLSWMDTLEGKFYW------RSTENITQTNRLMA 319
           +    +  +Y RS+    +   DY  N ++  T   ++Y        +  + + T  + A
Sbjct: 274 FGSGDADQDYARSEVFSLTASLDYRINDNFTLTNTSRYYRYDLDRNNTLADSSPTRFVTA 333

Query: 320 NDRSGAGILSYRRELRDE--GFNDEALGATLNAQKEWQQGEWLHQFAYGMSVDGHD-YQR 376
            D      L+     RDE   FN   L      +++ Q     H   YG+     D YQR
Sbjct: 334 PDGELLIKLNRGNVARDEYGVFNQTEL------KQQAQLAGMQHNLLYGVEAGFQDKYQR 387

Query: 377 --------------------PKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNL-LLG 415
                               P+    + S G + Q             G+Y QD + L  
Sbjct: 388 VLSQTNVAQVPVYRDALVPVPEHAANLSSKGTNFQQTT----------GLYVQDMIELNA 437

Query: 416 DWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHGF 475
            W    G+R+D       + DR+     +      WSP A + YQ     + Y+S +  +
Sbjct: 438 HWKALVGVRYDIFG-QEYDDDRVQNID-LDRTDKTWSPRAGLVYQPDAIQSYYVSVSRSY 495

Query: 476 RAPSYDKAYGASDHSFVPLTPFIIKPNNK-LRAETSDSFELGSKYD--NGQTQFYVAVFY 532
           + PS +               F + P+N+ L  E + ++E+G+K+D  + +     AVF 
Sbjct: 496 Q-PSGE--------------VFAVSPSNQHLEPEETTNYEIGAKWDLLDSRLSLTAAVFR 540

Query: 533 SIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVD-- 590
               N   +K     N   +V+   Q     +T G E +V   L D+W +     Y+D  
Sbjct: 541 LERTN---MKTADPANPNLTVLAGEQ-----RTDGFEATVSGHLTDKWQIYAGYAYLDAE 592

Query: 591 ---------GKDGENQ-------------YVRTLTP-LEGSVQLNYQRERWDAYSRLNWA 627
                    G   E Q              VRTLTP    +   NY  ER+ A   +   
Sbjct: 593 ITKSNSKTNGVANEGQTPTLTPRNSANVWLVRTLTPEWRVAAGANYVDERYTALDNV--- 649

Query: 628 SAMSRVPTCTTEQGKETECATTTGWVSWDIGLNY---QWNAQLSASFNVVNLLDREY 681
                                  G+ ++D  L Y   QW+A L     + N+ DR+Y
Sbjct: 650 -------------------VVMPGYTTFDAALLYSVPQWDAAL----RLKNVFDRDY 683