Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., Outer membrane vitamin B12 receptor BtuB from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 87.0 bits (214), Expect = 3e-21
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 18/171 (10%)

Query: 2   KLSPVSAAVLSVLAAGF----AHAETEPSHYE----EVVVTANRIEQPLSEVAGSVAVLE 53
           KL    AA+   L AGF    AHA++  S  +    E VVTA R+EQPL++V   V++++
Sbjct: 15  KLRAPLAALPLALLAGFGTSVAHAQSSSSPADTALKETVVTATRVEQPLTDVVADVSIVD 74

Query: 54  GETLEKQGKTELYDALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDG--IQSADG 109
              +E+ G T L D L + PG+S++  GG G   ++ +RG      A+  DG  I+S  G
Sbjct: 75  RAAIERSGATGLADVLARVPGISISRNGGPGATTSVYVRGGETRFTAVYVDGVRIESQGG 134

Query: 110 YGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPE 160
            G A        +   LS +++I+V++G ++ +YGS A+ GV+ I ++  E
Sbjct: 135 SGGA------SWSAIPLSRIERIEVLRGPAAAVYGSDAMAGVIQIFTRQGE 179



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 454 SASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSF 513
           SA+ +Y + P W    S    FR P+  + +       VP           LR ETS + 
Sbjct: 400 SAAYAYAFVPGWRVMTSAGTAFRVPTLYQRFSIYG---VP----------SLRPETSRNV 446

Query: 514 ELGSKYDNGQTQFYVAVFYS-IFDNFIDVKQVG-YDNATGSVIQQYQNIAGVKTYG 567
           E+G K + G + F V  + + + D    V   G   N TG+    Y N A  +  G
Sbjct: 447 EVGLKREVGSSLFSVVAYRNKVSDLITYVGGAGACINGTGAFPGCYANTARAEYSG 502