Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., TonB-dependent vitamin B12 receptor BtuB from Serratia liquefaciens MT49

 Score =  102 bits (253), Expect = 7e-26
 Identities = 159/712 (22%), Positives = 268/712 (37%), Gaps = 104/712 (14%)

Query: 8   AAVLSVLA-AGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELY 66
           A V SV A +G+A   T  ++ E +VV+ANR  QP+S V    +V+  + +++     L 
Sbjct: 10  AVVSSVTAFSGWAQDNTTANNSENLVVSANRFPQPVSSVLAPTSVVTRDEIDRWQAKSLT 69

Query: 67  DALNQEPGVSV--TGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTF 124
           D + + PGV V   GG G+  ++ IRG   + + ++ DGI+       A I+     +  
Sbjct: 70  DVMRRLPGVDVGQNGGLGQKSSLFIRGTNSSHVLVLIDGIR----LNQAGISGSSDLSQI 125

Query: 125 SLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQ 184
            +S V++++ ++G  S +YGS AIGGVV I +   ++            L+    SN YQ
Sbjct: 126 PISLVQKVEYIRGPRSAVYGSDAIGGVVNIITTREKN---------GTTLSAGVGSNGYQ 176

Query: 185 GNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLKTH 244
              A   +      + T+    G  T     D+      G         +++ +L     
Sbjct: 177 AYDASTQQQLGDSTVATV---AGNYTYTKGYDVVAYGSTGMQSQQDRDGFMSKSLYGAVD 233

Query: 245 LEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGADYTANLSWMDTLEGKFY 304
            ++        E  S   +   +D  + Y+   S    A V      + +W   L     
Sbjct: 234 HQF-------NEAISGFVRGYGYDNRTAYDAYYSSPTSALVDTRKLYSQTWDTGL----- 281

Query: 305 WRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQKEWQQGEWLHQFA 364
            R  E I  T  + +   S       RR     G  D +     + Q   Q G  L Q  
Sbjct: 282 -RYKEGIYATQLIGSYSHSKDYDYDPRR-----GMYDSSASLVDSEQYNLQWGNTL-QVG 334

Query: 365 YGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNLLLGDWTLAAGLR 424
            G    G D+Q     ++++     +  ++      +   GVY     L+G  TL   +R
Sbjct: 335 QGTVSSGIDWQH----QQIKPDSTTVNGEK-----TQRNAGVYLTAQQLVGPVTLEGAVR 385

Query: 425 FDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAY 484
            D       +    HG          W  SA   +++   +    SY   F+AP+  + Y
Sbjct: 386 GD-----DHSEFGWHG---------TWQTSA--GWEFIEGYRFIASYGTAFKAPNMGQLY 429

Query: 485 GASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQV 544
           G   +            N  L+ E S  +E G +   G   + V+ + +  DN ID    
Sbjct: 430 GNFGN------------NTDLKPEESKQWEGGFEGLTGPVTWRVSGYRNDIDNLID---- 473

Query: 545 GYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTP 604
               +TG     Y N+      G E +      D   + + +GY D  D  N     +  
Sbjct: 474 ----STGETNYVYYNVGKATIKGIEATASF---DTGPLTHHIGY-DYVDPRNAKTNEVLL 525

Query: 605 LEGSVQLNYQRERWDAYSRLNWASAMSRV-PTCTTEQGKETECATTTGWVS-WDIGLNYQ 662
                Q+ Y+ + W  Y   +WA     +      +     E +   G VS WD+ ++Y 
Sbjct: 526 RRAKQQVKYELD-WQVYD-FDWAVTYQYLGERYDKDYSTYPEQSVKLGGVSLWDLAVSYP 583

Query: 663 WNAQLSASFNVVNLLDREYTRYQDVAGVTPSDTLYS-TEPGRYFTVHAKYVF 713
             + L+    + NL D++Y            +T Y    PGR + +   Y F
Sbjct: 584 VTSHLTVRGRIANLFDKDY------------ETAYGYATPGREYYLTGSYTF 623