Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., vitamin B12/cobalamin outer membrane transporter (NCBI) from Escherichia coli BW25113

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 10/151 (6%)

Query: 8   AAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYD 67
           A++L+  +     A  + +  + +VVTANR EQP S V     V+  + +++   T + D
Sbjct: 5   ASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVND 64

Query: 68  ALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQ--SADGYGAADINDKYGRNT 123
            L + PGV +T  GG+G+  +I IRG   + + ++ DG++   A   G+AD++       
Sbjct: 65  VLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQ------ 118

Query: 124 FSLSNVKQIQVVKGASSTLYGSGAIGGVVII 154
           F ++ V++++ ++G  S +YGS AIGGVV I
Sbjct: 119 FPIALVQRVEYIRGPRSAVYGSDAIGGVVNI 149



 Score = 33.5 bits (75), Expect = 3e-05
 Identities = 57/266 (21%), Positives = 97/266 (36%), Gaps = 45/266 (16%)

Query: 451 WSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETS 510
           W  SA   +++   +    SY   ++AP+  + YG           F   PN  L  E S
Sbjct: 391 WQTSAG--WEFIEGYRFIASYGTSYKAPNLGQLYG-----------FYGNPN--LDPEKS 435

Query: 511 DSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEM 570
             +E   +       + ++ + +   + ID     YD+ T     +Y N    +  G E 
Sbjct: 436 KQWEGAFEGLTAGVNWRISGYRNDVSDLID-----YDDHT----LKYYNEGKARIKGVEA 486

Query: 571 SVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAM 630
           +      D   + + + Y D  D  N    T        Q+ YQ + W  Y   +W    
Sbjct: 487 TANF---DTGPLTHTVSY-DYVDARNAITDTPLLRRAKQQVKYQLD-WQLYD-FDWGITY 540

Query: 631 SRVPTCTTEQGKETECATTT-GWVS-WDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVA 688
             + T   +        T   G VS WD+ + Y   + L+    + NL D++Y       
Sbjct: 541 QYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDY------- 593

Query: 689 GVTPSDTLYSTE-PGRYFTVHAKYVF 713
                +T+Y  +  GR +T+   Y F
Sbjct: 594 -----ETVYGYQTAGREYTLSGSYTF 614