Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 663 a.a., ferric iron-catecholate outer membrane transporter (NCBI) from Escherichia coli BW25113

 Score = 77.8 bits (190), Expect = 2e-18
 Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 29  EEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQNIT 88
           E +VVTA+ +EQ L +   S++V+  E L+++    L D L + PGV +T      + ++
Sbjct: 31  ETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVS 90

Query: 89  IRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAI 148
           IRG+  +   I+ DG +  +   A   ++ +  N   + ++++I+VV+G  S+LYGS A+
Sbjct: 91  IRGLDSSYTLILVDG-KRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDAL 149

Query: 149 GGVVIIESK 157
           GGVV I +K
Sbjct: 150 GGVVNIITK 158



 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 42/280 (15%)

Query: 451 WSPSASISYQWHPEWNTYLSYNHGFRAPSY-DKAYGASDHSFVPLTPFIIKPNNKLRAET 509
           WSP A + Y           +   F+APS    +   + +S       +  P+  L+ ET
Sbjct: 394 WSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPD--LKPET 451

Query: 510 SDSFELGSKYDNGQ-----TQFYVAVFYSIFDNFIDVKQV-------GYDNATGSV---- 553
           S+S+ELG  Y   +      +  V VF +   + I + +        GY N  G      
Sbjct: 452 SESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFETGAN 511

Query: 554 -----IQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKD---GENQYVRTLTPL 605
                +  Y N+   +  G E  +    +D W +     Y DG+D   GEN+ +  L   
Sbjct: 512 GRRIPVFSYYNVNKARIQGVETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLSDLPFH 571

Query: 606 EGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNA 665
             +  L+     W   +  +W+  +S   T   ++       T  G+  W+ G  +Q   
Sbjct: 572 TANGTLD-----WKPLALEDWSFYVSGHYT-GQKRADSATAKTPGGYTIWNTGAAWQVTK 625

Query: 666 QLSASFNVVNLLDREYTRYQDVAGVTPSDTLYSTEPGRYF 705
            +     V+NL D++ +R          D  Y+ +  RYF
Sbjct: 626 DVKLRAGVLNLGDKDLSR---------DDYSYNEDGRRYF 656