Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 797 a.a., TonB-dependent receptor from Erwinia tracheiphila SCR3

 Score =  114 bits (286), Expect = 1e-29
 Identities = 177/775 (22%), Positives = 294/775 (37%), Gaps = 142/775 (18%)

Query: 30  EVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQ---- 85
           E+VVTA      L + AGS  V+  E ++K+G  +    +  EP +S  G +G       
Sbjct: 58  EMVVTA----PVLKKEAGSKTVVSAEEMQKKGTNDFGSVMRYEPLISAIGASGGSSAGKS 113

Query: 86  --------NITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSN-------VK 130
                      IRG+  NR+ +  DGI   +  G +    + G NTF +           
Sbjct: 114 GFDRSGYTGYNIRGLESNRVGLDVDGIPQPEATGRSYAG-RVGVNTFGIGRDYIDPYMYG 172

Query: 131 QIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQG----- 185
           Q+ +  GA+ST + + AIGG V    K+ +DYL          LTY G  + Y       
Sbjct: 173 QVDIESGATSTAWANNAIGGSVSFMPKSADDYLSPN------KLTYFGDQSDYDSANRSW 226

Query: 186 NHALAMRHGDG--EALLTIDYWQGEETRNFNQDLYNREVDGY-NLGFSHHYWL-NDALRL 241
           ++ + +  GD     +       G++TRN +  L     + Y N   +   W  ND  +L
Sbjct: 227 HNGITIAAGDETLRGVFVYSRRDGQQTRNNSGTLAAYPANWYSNAMLASGIWRPNDQHKL 286

Query: 242 KTHLEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRL--ASVGADYTANLSWMDTL 299
              ++Y+D        + +      W        Q+S TR    S+  ++T   ++ D+L
Sbjct: 287 TGTVDYYDKTNHTHFDSWNSAGSAIWGTAQ----QQSNTRRWGFSLKDEWTPVNAFADSL 342

Query: 300 EGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQKEWQQGEW 359
             + Y++ T+     N  M +  +    +    ++   GF  +   +             
Sbjct: 343 TSRVYYQQTQ--AHDNTWMPSSATAMQRVYSNYDVDTYGFETQLTKSLRR---------- 390

Query: 360 LHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNLLLG---- 415
            H  + G++    D  RP   R+  +        +P A +R Y  G Y QD +       
Sbjct: 391 -HDLSGGLNASTSDTTRP--FRQSPAPSQFTVIMQPQADSRSYMLGGYLQDQIHFDLDGH 447

Query: 416 DWTLAAGLRFDAQKLSPKNTDRI-HGYKVVT-----------MGSSEWSPSASISYQWHP 463
           D+++  G+R   Q   P+N   +  G  V+T              ++  PS S +Y   P
Sbjct: 448 DFSIVPGVRIAHQTTKPQNLYSLTTGSAVLTESQLQTLYGKANADTQVLPSLSFNYDLTP 507

Query: 464 EWNTYLSYNHGFRAPSYDKAYGASD--HSFVPLTPFIIKPNNKLRAETSDSFELGSKYDN 521
           +  TY+ Y  G + P   + +G+ +   S+     + +  N+ L+ ETS + E G K   
Sbjct: 508 QLMTYVMYKRGTQFPGASQLFGSWNLGSSYAGSQQYALIGNSDLKTETSKNVEWGLK--- 564

Query: 522 GQ----TQFYVAVFYSIFDNFI-------DVKQVGYDNATGSV--IQQYQNIAGVKTYGA 568
           GQ         A+FY+ ++NFI        V    + N   ++  I Q +N      YG 
Sbjct: 565 GQAVEGVTLNAAMFYNTYENFIAYTRYTRAVHPGMFSNVPSNIYTIFQAENRDKAYIYGG 624

Query: 569 EMSVMHRLD------DRWSVENKLGYVDGKD----GENQYV--RTLTPLEGSVQLNYQRE 616
           ++S            D  S    LGY  GK       +QYV   ++ P++  V +     
Sbjct: 625 QVSTKVNFGTWFEQVDGLSTTFALGYTQGKSKSSYAGDQYVDLDSVAPMKAIVGV----- 679

Query: 617 RWDAYSRLNWASAMSRVPTCTTEQGKET-----ECATTTGWVSWD-------------IG 658
            WD     + A       T T  +GK       E  T +G V  +             + 
Sbjct: 680 AWD-----DPAKRYGTAVTATFVKGKRAMETNREAYTNSGSVLTEASGEFMRVPGYGLLD 734

Query: 659 LNYQWNAQLSASFN--VVNLLDREYTRYQDVAGVTPS------DTLYSTEPGRYF 705
           +   W    +   N  + NL DR+Y  Y     +T S      D   +  PGR F
Sbjct: 735 MTAYWQVAKNVRVNGGIYNLTDRKYWDYLSSRNLTESTLQDAYDKALAVMPGRTF 789