Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., TonB-dependent vitamin B12 receptor from Enterobacter asburiae PDN3

 Score = 94.7 bits (234), Expect = 1e-23
 Identities = 161/702 (22%), Positives = 275/702 (39%), Gaps = 128/702 (18%)

Query: 29  EEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSV--TGGAGRPQN 86
           + +VVTANR EQP   +  + +V+    +++   T + D + + PGV     GG G+  +
Sbjct: 25  DSLVVTANRFEQPEKTILAATSVVTRADIDRWQSTSVLDVMRRLPGVDTAQNGGMGQLSS 84

Query: 87  ITIRGMTGNRIAIVRDGIQ--SADGYGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYG 144
           + IRG   + + I+ DGI+   A   G++D++       F +S V++I+ V+G  S +YG
Sbjct: 85  LFIRGTNSSHVLILVDGIRLNQAGVTGSSDLSQ------FPISLVQRIEYVRGPRSAVYG 138

Query: 145 SGAIGGVV-IIESKAPEDYLYHRDYYVDAALTYSGISNRYQGNHALAMRHGDGEALLTID 203
           S AIGGVV II ++A +    +          Y G + +  G+       GD        
Sbjct: 139 SDAIGGVVNIITTRAKDGTTLNAGVGSHGYQNYGGSTQQTLGDSTRVTLAGD------YT 192

Query: 204 YWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLKTHLEYFDDYAKRREGTSSIQK 263
           Y +G          ++   DG N G +      D    KT L    D+A   + +  ++ 
Sbjct: 193 YTKG----------FDVVADGNNGGLAQTD--RDGFMNKT-LYGALDHAFSEQWSGFVRG 239

Query: 264 DDKWDLVSFYEYQRSQTRLASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRS 323
               +  ++  Y  S T    V      + +W   L      R  ++I  +  L +   S
Sbjct: 240 FGYSNRTAYDGYYSSFTPDVLVDTRQLYSQTWDAGL------RFNDDIFHSQLLTSYSHS 293

Query: 324 GAGILSYRRELRDEGFNDEALG-----ATLNAQKEWQQGEWLH--QFAYGMSVDGHDYQR 376
                      +D  + D  LG     ATL+  K++   +WL+     +G    G D+Q+
Sbjct: 294 -----------KDYNY-DPNLGRYDSTATLDEIKQYNV-QWLNSVDVGHGNIGAGVDWQK 340

Query: 377 PKSI--RRMESSGDDLQADEPFAPAREYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKN 434
             +       ++G DL+             GVY       GD+ L   +R D      + 
Sbjct: 341 QSTEPGTNYVTNGYDLR-----------NTGVYLTGLQQFGDFILEGAVRSDDNSQFGR- 388

Query: 435 TDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPL 494
               HG          W  SA  ++++   +    SY   ++AP+  + YG         
Sbjct: 389 ----HG---------TWQSSA--AWEFVEGYRFVASYGTAYKAPNLGQLYG--------- 424

Query: 495 TPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVI 554
                  N+ L  E S  +E   +       + V+ + +  DN ID     +DN     +
Sbjct: 425 ----FYGNDHLDPEESKQWEGAFEGLTAGVSWRVSGYRNDVDNLID-----FDNN----L 471

Query: 555 QQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQ 614
           QQY N+   +  G E +      D   + + +GY D  D  N     L       Q+ YQ
Sbjct: 472 QQYYNVGKARIKGVEATASF---DTGPLTHTVGY-DYVDARNAATNELLDRRAKQQVKYQ 527

Query: 615 RERWDAYSRLNWASAMSRVPT-CTTEQGKETECATTTGWVS-WDIGLNYQWNAQLSASFN 672
            +    Y   +W+     + T   T+ G         G VS WD+ ++Y   + L+    
Sbjct: 528 LDT-QIYD-FDWSLTYHYLGTRYDTDFGAYPSEKVKMGGVSLWDVAVSYPVTSHLTVRGK 585

Query: 673 VVNLLDREYTRYQDVAGVTPSDTLYSTE-PGRYFTVHAKYVF 713
           + NL D++Y            +T+Y  +  GR +T+   Y F
Sbjct: 586 IANLFDKDY------------ETVYGYQTAGREYTLSGSYTF 615