Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., Vitamin B12 transporter BtuB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 84.7 bits (208), Expect = 1e-20
 Identities = 154/720 (21%), Positives = 265/720 (36%), Gaps = 124/720 (17%)

Query: 8   AAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYD 67
           A++L+  +     A  + +  + +VVTANR EQP S V     V+  + +++   T + D
Sbjct: 5   ASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVND 64

Query: 68  ALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQ--SADGYGAADINDKYGRNT 123
            L + PGV +T  GG+G+  +I IRG   + + ++ DG++   A   G+AD++       
Sbjct: 65  VLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQ------ 118

Query: 124 FSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRY 183
           F ++ V++++ ++G  S +YGS AIGGVV I +   E             ++    SN Y
Sbjct: 119 FPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEP---------GTEISAGWGSNSY 169

Query: 184 QGNHALAMRHGDGEALLTI--DYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRL 241
           Q       +    +  +T+  DY                    +  G+    + N   + 
Sbjct: 170 QNYDVSTQQQLGDKTRVTLLGDY-------------------AHTHGYDVVAYGNTGTQA 210

Query: 242 KTHLEYFDDYAKRREGTSSIQKDDKWD-LVSFYEYQRSQTRLASVGADYTANLSWMDTLE 300
           +T  + F   +K   G       D W   V  Y Y        +  A Y+     +DT  
Sbjct: 211 QTDNDGF--LSKTLYGALEHNFTDAWSGFVRGYGYDNR----TNYDAYYSPGSPLLDT-- 262

Query: 301 GKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQK----EWQQ 356
            K Y +S +   + N  +   +        +    D  F      ATL+  K    +W  
Sbjct: 263 RKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHFGRYDSSATLDEMKQYTVQWAN 322

Query: 357 GEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNLLLGD 416
              +   + G  VD            +E+  D            +   G+Y      +GD
Sbjct: 323 NVIVGHGSIGAGVDWQKQTTTPGTGYVENGYD------------QRNTGIYLTGLQQVGD 370

Query: 417 WTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHGFR 476
           +T     R D      +     HG          W  SA   +++   +    SY   ++
Sbjct: 371 FTFEGAARSDDNSQFGR-----HG---------TWQTSA--GWEFIEGYRFIASYGTSYK 414

Query: 477 APSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFD 536
           AP+  + YG           F   PN  L  E S  +E   +       + ++ + +   
Sbjct: 415 APNLGQLYG-----------FYGNPN--LDPEKSKQWEGAFEGLTAGVNWRISGYRNDVS 461

Query: 537 NFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGEN 596
           + ID     YD+ T     +Y N    +  G E +      D   + + + Y D  D  N
Sbjct: 462 DLID-----YDDHT----LKYYNEGKARIKGVEATANF---DTGPLTHTVSY-DYVDARN 508

Query: 597 QYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATT-TGWVS- 654
               T        Q+ YQ + W  Y   +W      + T   +        T   G VS 
Sbjct: 509 AITDTPLLRRAKQQVKYQLD-WQLYD-FDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSL 566

Query: 655 WDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVAGVTPSDTLYSTE-PGRYFTVHAKYVF 713
           WD+ + Y   + L+    + NL D++Y            +T+Y  +  GR +T+   Y F
Sbjct: 567 WDLAVAYPVTSHLTVRGKIANLFDKDY------------ETVYGYQTAGREYTLSGSYTF 614