Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., TonB-dependent receptor from Escherichia coli ECRC99

 Score = 99.8 bits (247), Expect = 4e-25
 Identities = 164/730 (22%), Positives = 287/730 (39%), Gaps = 99/730 (13%)

Query: 3   LSPVSAAVLSVLAAGFA-HAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQG 61
           LS +S  +  +++   A  +ET+ S+ E +VVT NR    L E   ++ V++ +TL+   
Sbjct: 12  LSTLSLCISGIVSTATATSSETKISNEETLVVTTNRSASNLWESPATIQVIDQQTLQNST 71

Query: 62  KTELYDALNQEPGVSVTGG--AGRPQNITIRGMTGNRIAIVRDGIQ-----SADGYGAAD 114
              + D L   PGV +T    AGR Q I IRG   +R+ I+ DG +     + D YG   
Sbjct: 72  NASIADNLQDIPGVEITDNSLAGRKQ-IRIRGEASSRVLILIDGQEVTYQRAGDNYGVGL 130

Query: 115 INDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYH---RDYYVD 171
           + D+        S +++++VVKG  S LYGS AIGG+V   +K   D L     +  Y  
Sbjct: 131 LIDE--------SALERVEVVKGPYSVLYGSQAIGGIVNFITKKGGDKLASGVVKAVYNS 182

Query: 172 AAL----------TYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNRE 221
           A            +  G   R  G+++        +  L          RN +Q ++   
Sbjct: 183 ATAGWEESIAVQGSIGGFDYRINGSYSDQGNRDTPDGRL-----PNTNYRNNSQGVWL-- 235

Query: 222 VDGYNLGFSHHYWLN-DALRLKTHLEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQT 280
             GYN G +H + L+ D  RL T   Y D        +  I K ++  +  FY+      
Sbjct: 236 --GYNSG-NHRFGLSLDRYRLATQTYYEDPDGSYEAFSVKIPKLEREKVGVFYD------ 286

Query: 281 RLASVGADYTANL---SWMDTLEGKF--YWRSTENI--------TQTNRLMANDRSGAGI 327
               V  DY   +   ++  T++ +F    ++T+ +        T  N+   +D+     
Sbjct: 287 --TDVDGDYLKKIHFDAYEQTIQRQFANEVKTTQPVPSPMIQALTVHNKTDTHDKQYTQA 344

Query: 328 LSYRRELRDEGFNDEALGATLNAQKEWQQGEWLHQFAYGMSVDG--HDYQRPKSIRRMES 385
           ++ +        N+   GA     +  Q+   +       S+ G  +   R +S    E 
Sbjct: 345 VTLQSHFSLPANNELVTGAQYKQDRVSQRSGGM---TSSKSLTGFINKETRTRSYYESEQ 401

Query: 386 SGDDLQADEPFAPAREYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVT 445
           S   L A   +  A  + + +  +   L    T   G+ + A  +S  +  R       +
Sbjct: 402 STVSLFAQNDWQFADHWTWTMGVRQYWLSSKLTRGDGVSYTAGIISDTSLAR------ES 455

Query: 446 MGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKL 505
               E   S S+ Y          ++  G+  P+  + +  +          +   N  L
Sbjct: 456 ASDHEMVTSTSLRYSGFDNLELRAAFAQGYVFPTLSQLFMQTSAG-----GSVTYGNPDL 510

Query: 506 RAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFI-------DVKQVGYDNATGSVIQQYQ 558
           +AE S++FELG++Y+  Q     AV+YS   ++I        +   G  N++ S    Y 
Sbjct: 511 KAEHSNNFELGARYNGNQWLIDSAVYYSEAKDYIASLICDGSIVCNGNTNSSRSSYYYYD 570

Query: 559 NIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQY----VRTLTPLEGSVQLNYQ 614
           NI   KT+G E+S  +   + W       Y+ G     QY    ++T    E ++     
Sbjct: 571 NIDRAKTWGLEISAEY---NGWVFS---PYISGNLIRRQYETSTLKTTNTGEPAINGRIG 624

Query: 615 RERWDAYSRLNWAS-AMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNV 673
            +      + N  S    R  +   +    TE     GW + +  +N ++  +     N+
Sbjct: 625 LKHTLVMGQANIISDVFIRAASSAKDDSNGTE-TNVPGWATLNFAVNTEFGNEDQYRINL 683

Query: 674 V--NLLDREY 681
              NL D+ Y
Sbjct: 684 ALNNLTDKRY 693