Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., catecholate siderophore receptor CirA from Escherichia coli ECRC98

 Score = 77.8 bits (190), Expect = 2e-18
 Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 29  EEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQNIT 88
           E +VVTA+ +EQ L +   S++V+  E L+++    L D L + PGV +T      + ++
Sbjct: 31  ETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVS 90

Query: 89  IRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAI 148
           IRG+  +   I+ DG +  +   A   ++ +  N   + ++++I+VV+G  S+LYGS A+
Sbjct: 91  IRGLDSSYTLILVDG-KRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDAL 149

Query: 149 GGVVIIESK 157
           GGVV I +K
Sbjct: 150 GGVVNIITK 158



 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 38/276 (13%)

Query: 451 WSPSASISYQWHPEWNTYLSYNHGFRAPSY-DKAYGASDHSFVPLTPFIIKPNNKLRAET 509
           WSP A + Y           +   F+APS    +   + +S       +  P+  L+ ET
Sbjct: 394 WSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPD--LKPET 451

Query: 510 SDSFELGSKYDNGQ-----TQFYVAVFYSIFDNFIDVKQV-------GYDN-----ATGS 552
           S+S+ELG  Y   +      +  V VF +   + I + +        GY N     A G 
Sbjct: 452 SESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFTANGV 511

Query: 553 VIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKD---GENQYVRTLTPLEGSV 609
            +  Y N+   +  G E  +    +D W +     Y DG+D   GEN+ +  L     + 
Sbjct: 512 PVFSYYNVNKARIQGVETELKIPFNDEWKLSLNYTYNDGRDVSNGENKPLSDLPFHTANG 571

Query: 610 QLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSA 669
            L+     W   +  +W+  +S   T   ++       T  G+  W+ G  +Q    +  
Sbjct: 572 TLD-----WKPLALEDWSFYVSGHYT-GQKRADSATAKTPGGYTIWNTGAAWQVTKDVKL 625

Query: 670 SFNVVNLLDREYTRYQDVAGVTPSDTLYSTEPGRYF 705
              V+NL D++ +R          D  Y+ +  RYF
Sbjct: 626 RAGVLNLGDKDLSR---------DDYSYNEDGRRYF 652