Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., TonB-dependent vitamin B12 receptor BtuB from Escherichia coli ECRC62

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 10/151 (6%)

Query: 8   AAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYD 67
           A++L+  +     A  + +  + +VVTANR EQP S V     V+  + +++   T + D
Sbjct: 5   ASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVND 64

Query: 68  ALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQ--SADGYGAADINDKYGRNT 123
            L + PGV +T  GG+G+  +I IRG   + + ++ DG++   A   G+AD++       
Sbjct: 65  VLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQ------ 118

Query: 124 FSLSNVKQIQVVKGASSTLYGSGAIGGVVII 154
           F ++ V++++ ++G  S +YGS AIGGVV I
Sbjct: 119 FPIALVQRVEYIRGPRSAVYGSDAIGGVVNI 149



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 69/340 (20%), Positives = 122/340 (35%), Gaps = 69/340 (20%)

Query: 403 RFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMG------------SSE 450
           ++ V   +N+++G  ++ AG+ +  Q  +P      +GY     G            + E
Sbjct: 315 QYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVENGYDQRNTGIYLTGLQQVGDFTFE 374

Query: 451 WSPSASISYQW--HPEWNT------------YLSYNHGFRAPSYDKAYGASDHSFVPLTP 496
            +  +  + Q+  H  W T              SY   ++AP+  + YG           
Sbjct: 375 GAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYG----------- 423

Query: 497 FIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQ 556
           F   PN  L  E S  +E   +       + ++ + +   + ID     YD+ T     +
Sbjct: 424 FYGNPN--LDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLID-----YDDHT----LK 472

Query: 557 YQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRE 616
           Y N    +  G E +      D   + + + Y D  D  N    T        Q+ YQ +
Sbjct: 473 YYNEGKARIKGVEATANF---DTGPLTHTVSY-DYVDARNAITDTPLLRRAKQQVKYQLD 528

Query: 617 RWDAYSRLNWASAMSRVPTCTTEQGKETECATTT-GWVS-WDIGLNYQWNAQLSASFNVV 674
            W  Y   +W      + T   +        T   G VS WD+ + Y   + L+    + 
Sbjct: 529 -WQLYD-FDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIA 586

Query: 675 NLLDREYTRYQDVAGVTPSDTLYSTE-PGRYFTVHAKYVF 713
           NL D++Y            +T+Y  +  GR +T+   Y F
Sbjct: 587 NLFDKDY------------ETVYGYQTAGREYTLSGSYTF 614