Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., TonB-dependent vitamin B12 receptor BtuB from Dickeya dianthicola ME23

 Score = 96.7 bits (239), Expect = 3e-24
 Identities = 152/701 (21%), Positives = 269/701 (38%), Gaps = 127/701 (18%)

Query: 8   AAVLSVLAAGFAHAE--TEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTEL 65
           AA+++   +G+A     T+ +  + +VVTANR  QP+S V     V+  + +++     +
Sbjct: 10  AAMIATAFSGWAQGSDNTQQNSNDAMVVTANRFPQPISSVLAPTTVVTRDDIDRWQSKNV 69

Query: 66  YDALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQSADG--YGAADINDKYGR 121
            + + + PGV ++  GG G+  +I IRG       ++ DG+  A     G AD N     
Sbjct: 70  LEVMKRLPGVDISQNGGLGQSASIYIRGSEARHTLVLIDGVPLAKPGITGVADFNQ---- 125

Query: 122 NTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISN 181
               +S V++I+ ++G  S++YG+ AIGGV+ I +++ +          D  L     SN
Sbjct: 126 --IPMSLVQRIEFIRGPRSSVYGADAIGGVINIITQSDKK---------DGTLETGIGSN 174

Query: 182 RYQG-NHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALR 240
            YQ  N +L     D   L     +Q  +T+ FN     R    Y+       W N    
Sbjct: 175 HYQQYNGSLRQAITDNTTLTLAGAYQ--DTKGFN----IRPTSTYSPDSDRDGWRN---- 224

Query: 241 LKTHLEYFDDYAKRREGTSSIQKDDKWD-LVSFYEYQRSQTRLASVGADYTANLSWMDTL 299
                       K   G      +++W   +  Y Y  +      VG   +A+       
Sbjct: 225 ------------KSFWGGVDHHFNEQWSAFIRGYGYGSNSD--YDVGGPNSAD------- 263

Query: 300 EGKFYWRSTENITQTNRLMANDRSGAGILSYRR-----ELRDEGFNDEALGATLNAQKEW 354
           E + Y  + +      R M  D +   I SY++      L  EG   +A       Q+  
Sbjct: 264 EQQIYNHTYDTGV---RFMRGDFASQLIASYQKYNFLNYLGTEGRYGDASSLDKMEQRNL 320

Query: 355 QQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNLLL 414
           Q G   ++   GM   G D+Q+ K      +    ++    +   +    G+Y      +
Sbjct: 321 QWGN-TYRIGQGMLSAGLDWQQQKLFSEGVNFNTAVRESNDY---KRDNTGIYLTAQQQI 376

Query: 415 GDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHG 474
              T+   LR D  +   +     HG          W  +A   +++ P++   LSY  G
Sbjct: 377 SSVTIEGSLRSDDNEQFGR-----HG---------TWQTAA--GWEFLPDYKLTLSYGTG 420

Query: 475 FRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSI 534
           F+AP+  + +G   +         I PN  L+ E S  +E G +   G   + ++ + + 
Sbjct: 421 FQAPTLGQMFGQKYND--------ILPNKNLKPEESKQWETGLEGITGPLNWRLSAYRNE 472

Query: 535 FDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDG 594
             N I      Y +   +    Y NI      G E +        ++ +  LGY+D +  
Sbjct: 473 ITNLIT-----YSSNPVTFQGTYSNIKAATLKGVEWTGQFD-TGIFNHQITLGYLDARRD 526

Query: 595 ENQYVRT--------------LTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQ 640
           E+  V                +  L+  V   Y  +R+D  +   +AS   ++P+ +T  
Sbjct: 527 EDHEVLARRAKQQAKYQLGWKVYDLDVDVSYQYFSKRYDNNTN-EFASTQRQLPSYSTV- 584

Query: 641 GKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREY 681
                          DI  +Y   + L+    + NL D+ Y
Sbjct: 585 ---------------DIAASYPVTSHLTVRARIANLFDKNY 610