Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 733 a.a., TonB-dependent siderophore receptor from Dickeya dianthicola ME23

 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 142/621 (22%), Positives = 236/621 (38%), Gaps = 110/621 (17%)

Query: 13  VLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQE 72
           V A+  A    E  +     VT  R +  L ++  +V V+  + LE Q    L +AL   
Sbjct: 60  VTASTPASGARETGYQPHNAVTGTRTDSRLLDIPQAVNVVPQQVLEDQAARTLDEALYNV 119

Query: 73  PGVSVTGGAGRPQNITI-RGMTGNRI-AIVRDGIQSADGYGAADINDKYGRNTFSLSNVK 130
            G++     G  Q+  + RG   NR  +I+RDG++S          ++            
Sbjct: 120 SGITQANTLGGTQDAVMKRGFGDNRDGSILRDGMRSIQARNVTPTTER------------ 167

Query: 131 QIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQ-----G 185
            ++V+KG +S LYG G  GG++ I SK PE  L  + +      +++G   +       G
Sbjct: 168 -VEVLKGPASMLYGWGEPGGMINIISKKPE--LVQKTHIEGWNSSFNGGGGQLDVTGPLG 224

Query: 186 NHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLKT-- 243
              LA R       + +D+ + +  RNF +   NR+     L  S   W  D   ++   
Sbjct: 225 TSGLAYR-------MLVDHDETDYWRNFGR---NRQT---TLAPS-LMWYGDNTTVRVSY 270

Query: 244 -HLEYFDDYAK------RREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGADYTANLSWM 296
            H+EY   + +      R     +  ++ ++D    Y   R      +V  +   N  W 
Sbjct: 271 EHMEYLTPFDRGTVIDSRTGKPVNTPRERRFD--ETYNATRGDQDTLTVQMENAINDRWK 328

Query: 297 DTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRE-LRDEGFNDEALGATLNAQKEWQ 355
             L    Y R+T N  Q   +  N  +  G+L+ R +  +D     +    TLN   +W 
Sbjct: 329 TKL-NYAYSRNTYNDNQARAMSLNPNT--GLLTRRADATQDAHSQSQNAQLTLNGDIDW- 384

Query: 356 QGEWLHQFAYGMSVDGHDYQRPKSIRRMES--------------SGDDLQADEPFAPARE 401
            G   HQ  +G   +     R   IR   +              +   + A E       
Sbjct: 385 -GSINHQLLFGFDHEADRTHRGNMIRGATNNRFNIYNPVYGLLPASTSVIATESDQKEDV 443

Query: 402 YRFGVYGQDNLLLGD-WTLAAGLRFDA-QKLSPK------NTDRIHGYKVVTMGSSEWSP 453
              GV+ QD + L + W L  G+R+D+   +S K      NTDR           S   P
Sbjct: 444 DSTGVFMQDAMRLDEHWMLLGGVRYDSFDVMSGKGRPFVTNTDR---------SDSRLVP 494

Query: 454 SASISYQWHPEWNTYLSYNHGFRAPS-YDKAYGASDHSFVPLTPFIIKPNNKLRAETSDS 512
            A + Y      + Y SY+  F+  S  +KA GA+                 +  E   S
Sbjct: 495 RAGVVYNLTSYASLYTSYSESFKPNSAINKAIGAT-----------------MEPEVGRS 537

Query: 513 FELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAG-VKTYGAEMS 571
           +E+G+K D       +    ++FD  I  + V  D       +     AG +++ G E+ 
Sbjct: 538 YEVGAKLDLPNR---ITANLALFD--IQKRNVMVDELVNG--ETVTRTAGKIRSQGVEVD 590

Query: 572 VMHRLDDRWSVENKLGYVDGK 592
           V  +L D  S+     + D +
Sbjct: 591 VAGKLTDSLSLIGSYAFTDAR 611