Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., exogenous ferric siderophore receptor from Agrobacterium fabrum C58

 Score = 87.4 bits (215), Expect = 2e-21
 Identities = 170/735 (23%), Positives = 281/735 (38%), Gaps = 137/735 (18%)

Query: 8   AAVLSVLAAGFA------HAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQG 61
           +A ++  A GFA       A    +  +++VVTA+  EQ + +   S+ V+  E LEK  
Sbjct: 20  SAAMAGTALGFAVPAFAQQASEGNTVLQQIVVTASGFEQNVKDAPASITVVTREDLEKGS 79

Query: 62  KTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGR 121
             +L DAL +  GVSVTG A   +++ IRG+ G    I+ DG + +      + N  + +
Sbjct: 80  YRDLTDALREVQGVSVTGIANE-KDVFIRGLPGAYTLILVDGKRQSTRDARTNGNSGFEQ 138

Query: 122 NTF-SLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGIS 180
           +    +S +++I+VV+G  S+LYGS A+GGV+ I ++   D           ++T  G  
Sbjct: 139 SFVPPVSAIERIEVVRGPMSSLYGSDAMGGVINIITRKVGDVW-------SGSVTTEGTV 191

Query: 181 NRYQ--GNHALAMRHGDGEAL---LTIDYW-----QGEETRNFNQDLYNREVD-----GY 225
            ++   GN      + +G  L   L +  W     +GE+ R  N     +E D      +
Sbjct: 192 QQHSKFGNSGQVSWYANGPILKDQLGLQLWGRGFTRGED-RILNGTTGAKEYDFNGRLTF 250

Query: 226 NLGFSHHYWLNDA-LRLKTHLEYFDDYAKR-REGTSSIQKDDKWDLVSFYEYQRSQT-RL 282
                H  +L     RL+   E  D  A     GT +    D W L        S T R 
Sbjct: 251 TPNEDHDIYLEGGKTRLRRDAEPGDTLAATDANGTYNTNTRDHWSL--------SHTGRW 302

Query: 283 ASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDE 342
               ++++    W +          T N T+T R+  N RS       R  + D  F   
Sbjct: 303 GPTTSEFSFQQEWAERT------NFTRN-TRTGRVTENPRSP----EIRNTVLDGKFTTP 351

Query: 343 ALGATLNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREY 402
                               F     V G  Y   +     ++ G     DE F+     
Sbjct: 352 -----------------FELFGNHTLVTGGQYFEARLTD--QNPGRRTDRDETFSAT--- 389

Query: 403 RFGVYGQDN-LLLGDWTLAAGLRFD-AQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQ 460
           ++ ++ +D   ++ ++ L  GLR D  +K     + R++G          WS +  ++ +
Sbjct: 390 QWALFLEDEWRIVDNFALTGGLRLDNHEKYGNHFSPRLYGV---------WSATEELTIK 440

Query: 461 WHPEWNTYLSYNHGFR-------APSYDKAYGASDHSFVPL-TPFIIKPNNKLRAETSDS 512
                      + GFR       AP Y    G    S+ P  T  +I  +  L AE S S
Sbjct: 441 G--------GVSTGFRAPEIRQIAPGYAYTTGGGGCSYGPSGTCGVIIGDPNLEAEKSTS 492

Query: 513 FELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNAT---GSVIQQYQ-----NIAGVK 564
           +E+ + +DNG        FY+ F + I    V   + T    S  + Y+     NI    
Sbjct: 493 YEIAALWDNGDIALGATYFYTDFKDKISNALVLNPDGTPARWSEDRNYRLWYNYNIDDAI 552

Query: 565 TYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQY-----VRT-----------LTPLEGS 608
             G E++         ++     Y   +     Y      RT           +TP++G 
Sbjct: 553 IQGVELTATWYATSELTLRGNYTYTHSEQKTGDYEGFPLARTPEHMANLRGDWVTPIDGL 612

Query: 609 ---VQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNA 665
              V LNY     +A  R+    A     T   + G++ +  TT      DIG  Y    
Sbjct: 613 EAWVSLNYHGSEINAGPRI---GANGTPVTINGQSGRKYDAYTTL-----DIGAKYAVAE 664

Query: 666 QLSASFNVVNLLDRE 680
            +  +  V N+ D++
Sbjct: 665 NVDLNAAVYNVFDKD 679