Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Vitamin B12 transporter BtuB from Acinetobacter radioresistens SK82

 Score = 72.8 bits (177), Expect = 5e-17
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 8   AAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYD 67
           A  +    A FA   T  +  + +VVTA++  +  SEV   + ++E E LE+     L  
Sbjct: 15  AIAMGCSPAIFAEDTTISAQLDPIVVTASKSAEKASEVPARITIIEPEVLEQSPIASLPQ 74

Query: 68  ALNQEPGVSV--TGGAGRPQNITIRGMTGNRIAIVRDGIQ-SADGYGAADINDKYGRNTF 124
            L  +  +++  +GG G+  +I +RG   ++  I+RDG++ ++   G A +         
Sbjct: 75  LLQTDAAINMVQSGGYGQIASIFLRGGKSDQALILRDGVRLNSATSGTASLA------FI 128

Query: 125 SLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPE 160
             ++++QI+V+KG +S LYG+ AI GVV + SK PE
Sbjct: 129 DTTDIQQIEVLKGPASVLYGTDAISGVVQLISKTPE 164



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 44/233 (18%)

Query: 456 SISYQWHPEWNTYLSYNHGFRAPSYDK--AYGASDHSFVPLTPFIIKPNNKLRAETSDSF 513
           S+ YQ  P  + Y +    F+AP+ +   AYG +           +KP   L  E     
Sbjct: 385 SVRYQVLPLTSVYGNIGSAFKAPTLNDMYAYGGNPD---------LKPEESLSYEIGLDQ 435

Query: 514 ELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVM 573
           +L      G     ++++ +  DN ID            ++ Q +N+   K  G+E+ V 
Sbjct: 436 KLAYNISTG-----LSLYITQVDNLIDF---------DGILNQMRNLDKAKMEGSELYV- 480

Query: 574 HRLDDRWSVEN-----KLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWAS 628
                +W  +N        YV  K+  N    +  P +        R+    +S    A+
Sbjct: 481 -----KWQGKNLFTNLSYNYVRAKNKNNDEDLSRRPRQNIALTAGWRDEHYIFSTTMLAN 535

Query: 629 AMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREY 681
                           +     G    DI   YQ N  ++   N+ N+ D +Y
Sbjct: 536 G--------HYDNSAFDDVQIPGHFRVDIHGQYQINNHINIFTNIQNVSDSKY 580