Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  288 bits (736), Expect = 3e-82
 Identities = 171/440 (38%), Positives = 252/440 (57%), Gaps = 17/440 (3%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F    L  RLLK +A   F + T +Q  AIPL + GRDL  +++TGSGKT AFVLP+L++
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            L   A      + LIL+PTRELA+Q   E+          + +ITGGE+F  Q   L +
Sbjct: 62  -LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
            P  ++ TPGR+ + L+  +L L+ +E LVLDEADRMLD+GFA +++R+ +   +R+ QT
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQ-QT 179

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           ++FSAT   + + +M  ++LN P+ + +   S+ +    Q     DH  HKE +L+ +LA
Sbjct: 180 MLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLA 239

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
           +  Y++ I+FT TRA  DR+  +L     KA  L G  +Q  R   + + +    KILV 
Sbjct: 240 NETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVA 299

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TDVA+RGLD+  +  VINFDMP+  +EYVHR+GRTGRAGN G A+SL+   DW     +E
Sbjct: 300 TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359

Query: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFYQNV 426
            +L+Q  +   +  ++G + G K  +A  KA     V K K  +K  K     KS     
Sbjct: 360 RYLKQSFERRTIKEVKGTYTGPKKVKASGKAV---GVKKKKTDAKGDKKKTGAKS----- 411

Query: 427 AVGDSVFIPKKKVAPKPEVD 446
                    K+K+A +P+ D
Sbjct: 412 -------PTKRKIANRPKTD 424