Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  248 bits (634), Expect = 2e-70
 Identities = 152/421 (36%), Positives = 236/421 (56%), Gaps = 10/421 (2%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F +LGL   ++K L    + + T IQQ+AIP+ + GRDL   ++TG+GKT AF LP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 65  -HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKA 123
            + +   K    K  R L+L PTRELA Q+    R     L  +   + GG   N Q++A
Sbjct: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 124 LARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRR 183
           L+ G   +VATPGRL D +D R+  ++  E  VLDEAD+M+D+GF   L+RI      R 
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLP-RD 179

Query: 184 RQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDR 243
           RQ L FSAT+   ++  +A + LN+P ++++   S   + + Q     +  + K+ALL  
Sbjct: 180 RQNLFFSATMPK-EIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAE-KQALLHI 237

Query: 244 ILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKI 303
           +L   E  + +IFT T+   DR+   L    ++A A+ GN +Q QR T +  F     K+
Sbjct: 238 VLKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKL 297

Query: 304 LVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFK 363
           LV TD+A+RG+D+  V+HVINF++P   E+YVHR+GRT RAG  G A+S V   +    K
Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLK 357

Query: 364 RVEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFY 423
            +E     +++ E++   E   + ++     PK AP QR   +++P++  K A   + + 
Sbjct: 358 AIER--ATKVKPEIVPLPENFLEAVR---NLPKPAP-QRRGPSQSPAQQAKRAEGQRRYQ 411

Query: 424 Q 424
           +
Sbjct: 412 E 412