Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  272 bits (695), Expect = 3e-77
 Identities = 172/492 (34%), Positives = 257/492 (52%), Gaps = 50/492 (10%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F  LGL   L++ +    + Q T +QQ+AIP  + GRDL+ +++TG+GKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 65  HKSL------KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFN 118
            +        K++    + PR L+L PTRELA QV+   +     L   +  I GG   N
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 119 DQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNA 178
            Q++A+A+G   +VA PGRL D      + L  +E LVLDEADRMLD+GF  +++++  A
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVL-A 179

Query: 179 AKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKE 238
               +RQ L+FSAT    D+ D+A +LL+ P+RI +   +   + I Q  Y      HK 
Sbjct: 180 RLPAKRQNLLFSATFSK-DITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLP-ASHKR 237

Query: 239 ALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFER 298
           ALL  ++    + QV++FT T+   +RL E L +  L A A+ GN +Q  R   +  F+ 
Sbjct: 238 ALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 299 AVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
              ++LV TD+A+RGLDI  + HV+NF++P   E+YVHR+GRTGRAG  G+A+SLV P +
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 359 WESFKRVEAFLQQEIQFEVLAGLEG----------------------------------- 383
            +  K +E   +Q I    L G +                                    
Sbjct: 358 EKLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTN 417

Query: 384 ---KFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFYQNVAVGDSVFIPKKKVA 440
              K KG    +A+ +AA  +  +K K+  K +   PRDK      A  +SV  PK    
Sbjct: 418 GGRKDKGKDKGKARQQAA-AKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSV--PKPPAD 474

Query: 441 PKPEVDLEDDID 452
             PE  L+D++D
Sbjct: 475 RDPEEFLDDELD 486