Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score =  293 bits (749), Expect = 1e-83
 Identities = 164/412 (39%), Positives = 246/412 (59%), Gaps = 2/412 (0%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F    L  RLLK +A   F + T +Q  AIPL + GRDL  +++TGSGKT AFVLP+L++
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            +        + R LIL+PTRELA+Q   +++         + L+TGGE+F +Q   L +
Sbjct: 62  LVDLSG-PRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 120

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
            P  ++ TPGRL + L+  +L L  ++ L+LDEADRMLD+GFA+++ R+    ++R  QT
Sbjct: 121 VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRE-QT 179

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           L+FSAT   A + D+  ++L +P+ + +   S+  +   Q     DH  HKE +   +LA
Sbjct: 180 LLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLA 239

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
           +  + + IIFT TRA  DR+   L   ++KA  L G  +Q  R   + +F++   K+LV 
Sbjct: 240 NETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVA 299

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TDVA+RGLDI  +  VINFDMP+  +EYVHRVGRTGRAG +G A+SL+   DW     +E
Sbjct: 300 TDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIE 359

Query: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPR 418
            +L+Q+ +  V+  ++G + G K  +A  KAA +++    K     K AA R
Sbjct: 360 RYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKR 411