Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., ATP-dependent RNA helicase RhlE from Methylophilus sp. DMC18

 Score =  284 bits (727), Expect = 4e-81
 Identities = 165/423 (39%), Positives = 236/423 (55%), Gaps = 4/423 (0%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           L F DL LD  +L+ L    ++  T IQ Q+IP  + GRD++AS++TG+GKT AF LP L
Sbjct: 1   LSFADLNLDPSILRALTDAGYENPTPIQAQSIPEALQGRDIMASAQTGTGKTAAFTLPAL 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
           +         ++ PR L+L PTRELA QV    R     L      I GG  +  Q K L
Sbjct: 61  NLLATPHPVRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARCISIVGGMPYPLQNKLL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
           ++    +VATPGR  DHL+   + L  L+ LVLDEADRMLD+GF  ++ RI  A     R
Sbjct: 121 SQPLDILVATPGRFIDHLERGRIDLSRLQMLVLDEADRMLDMGFMPDVERICEALP-AER 179

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           QTL+FSATLD   + D+    LN P  I +    E+H +I Q  +  D ++HK  LL+ +
Sbjct: 180 QTLLFSATLD--GIMDIGKRFLNNPLTIQVAGQKEKHANIEQRLHFVDDMNHKNKLLEHL 237

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           L   +  Q IIFT+T+   D L E L        AL G++ Q  RN  + +      K+L
Sbjct: 238 LIAPDVNQTIIFTSTKRHADLLAEDLYAAGHSTAALHGDMTQGARNRTLTKLRHGDVKVL 297

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           V TDVA+RG+D+  ++HVIN+D+PK  E+YVHR+GRTGRA N G A+S     D    ++
Sbjct: 298 VATDVAARGIDVQGISHVINYDLPKFAEDYVHRIGRTGRANNTGVAISFASNADRHLLRK 357

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFYQ 424
           +E +  Q++Q EV+AG E K + ++      +        + K   +  + + + KSF +
Sbjct: 358 IEQYTGQKLQAEVIAGFEPK-RAVRMDDGDSRRGKRPGKPQGKGGFRRDERSAQPKSFGE 416

Query: 425 NVA 427
            VA
Sbjct: 417 RVA 419