Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., ATP-dependent RNA helicase SrmB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  258 bits (660), Expect = 2e-73
 Identities = 150/414 (36%), Positives = 222/414 (53%), Gaps = 8/414 (1%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F +L LD  LL  L    F + T IQ  AIP  + GRD+L S+ TG+GKT A++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            L      +  PR LIL PTRELA QV    R +          ITGG  + +  +  + 
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
               +VAT GRL  ++   +     +ETL+LDEADRMLD+GFA+++  I    + R+ QT
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK-QT 184

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           ++FSATL+   + D A  LL +P  ++    + E K I Q +Y  D+ +HK ALL  +L 
Sbjct: 185 MLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHLLK 244

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
             +  + I+F   R     L E L    +    L G + Q +RN  + +       +LV 
Sbjct: 245 QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVA 304

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TDVA+RG+DIP V+HVINFDMP+  + Y+HR+GRTGRAG KG A+SLV   D     ++ 
Sbjct: 305 TDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIG 364

Query: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDK 420
            ++++ ++  V+         L+P    P    T + +K     +++K   ++K
Sbjct: 365 RYIEEPLKARVI-------DELRPTTRAPSEKLTGKPSKKVLAKRAEKKKEKEK 411