Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., ATP-dependent RNA helicase CsdA (EC 5.99.1.-) from Kangiella aquimarina DSM 16071

 Score =  240 bits (613), Expect = 8e-68
 Identities = 141/375 (37%), Positives = 216/375 (57%), Gaps = 12/375 (3%)

Query: 2   ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
           ++   F +LGL   +LK++    ++Q + IQ  +IP+ ++G+D++  ++TG+GKT AF L
Sbjct: 5   QTITSFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMSGKDIIGQAQTGTGKTAAFAL 64

Query: 62  PMLHKSLKTKAFSAKDPRG--LILVPTRELAKQVYGELRSMLGGLSYTATL-ITGGENFN 118
           PML K        AKD     L+L PTRELA QV    +S    +     L I GG+ ++
Sbjct: 65  PMLSK------LDAKDSNTQLLVLAPTRELAIQVAEACQSYAKNMPGMNVLPIYGGQRYD 118

Query: 119 DQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNA 178
            Q++ L RG + +V TPGR+ DH+   +L L+ L+ LVLDEAD ML +GF +++  +   
Sbjct: 119 TQLRQLKRGAQIVVGTPGRVMDHIRRGTLNLDNLKALVLDEADEMLRMGFIEDVEWVLGH 178

Query: 179 AKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKE 238
               R Q  +FSAT+   ++  +A + LNEP+ I I   +     I Q ++L   L HK 
Sbjct: 179 TPDTR-QIALFSATMPK-EIKKVAEKYLNEPEHIKIQSKTSTATTIDQRYWLVSGL-HKL 235

Query: 239 ALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFER 298
             L R+L   E+  +IIF  T+  T  L +KL     +A AL+G++ Q  R  I+ + ++
Sbjct: 236 DALTRVLETEEFDGMIIFVRTKIATIELADKLTARGFRAEALNGDIAQNARERIVEKLKK 295

Query: 299 AVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
               IL+ TDVA+RGLD+  ++HV+N+D+P  TE YVHR+GRTGRAG  G A+  V  ++
Sbjct: 296 GQSDILIATDVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGHAILFVAHRE 355

Query: 359 WESFKRVEAFLQQEI 373
               K +E    Q I
Sbjct: 356 RRMLKAIERATNQPI 370