Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., ATP-dependent RNA helicase SrmB from Erwinia amylovora T8

 Score =  264 bits (674), Expect = 5e-75
 Identities = 159/422 (37%), Positives = 233/422 (55%), Gaps = 7/422 (1%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F +L LD  LL++L    F + T IQ +AIP  + GRD+L S+ TG+GKT A++LP L  
Sbjct: 6   FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            L      +  PR LIL PTRELA QV  + R +          ITGG  F +  +  + 
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHAEVFSE 125

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
               +VAT GRL  ++   +     +ETL+LDEADRMLD+GFA+++  I +A    R+QT
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI-SAETRWRKQT 184

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           L+FSATL+   + D A  +LNEP  I       E K I Q +Y  D + HK ALL  +L 
Sbjct: 185 LLFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLLHLLK 244

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
             E  + ++F   R     +   L +  + +  L G L Q +RN  + +       +LV 
Sbjct: 245 QPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVNVLVA 304

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TD+A+RG+DI  V+HVINFDMP  ++ Y+HR+GRTGRAG KG A+SLV   D     ++ 
Sbjct: 305 TDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLLGKII 364

Query: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAA---PRDKSFY 423
            ++++ I+  V+  L    +   P + K K  P+++V   +   K+K+ A   PR K  +
Sbjct: 365 RYVKEPIKARVIDQLRPTTRA--PNE-KLKGKPSKKVLAKRVEQKNKQKAEEKPRVKERH 421

Query: 424 QN 425
           +N
Sbjct: 422 RN 423