Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., ATP-dependent RNA helicase SrmB from Erwinia tracheiphila SCR3

 Score =  262 bits (670), Expect = 1e-74
 Identities = 152/420 (36%), Positives = 225/420 (53%), Gaps = 3/420 (0%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F +L LD  LL  L    F + T IQ  AIP  + GRD+L S+ TG+GKT A++LP+L  
Sbjct: 6   FSELELDENLLNALQEKGFSRPTAIQAAAIPPALEGRDILGSAPTGTGKTAAYLLPVLQH 65

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            L      +  PR L+L PTRELA QV  + R +          ITGG  + +  +  ++
Sbjct: 66  LLDFPRKKSGPPRILVLTPTRELAMQVADQARELARHTHLDIATITGGVAYMNHAEVFSK 125

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHR-RRQ 185
               +VAT GRL  ++   +     +ETL+LDEADRMLD+GFA+++  I  AA+ R R+Q
Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETI--AAETRWRKQ 183

Query: 186 TLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRIL 245
           TL+FSATL+   + D +  LLN+P  +       E K I Q +Y  D + HK ALL  +L
Sbjct: 184 TLLFSATLEGGAIKDFSERLLNDPVEVEADPARRERKKIQQWYYRADDITHKTALLVHLL 243

Query: 246 ADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILV 305
              E  + +IF   R     L   L +  +    L G L Q +RN  + + +     +LV
Sbjct: 244 KQPEVSRSVIFVRKRERVHELCGWLREAGINTSYLEGELEQYRRNEAIKRVDDGRVNVLV 303

Query: 306 TTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRV 365
            TDVA+RG+DI  V+HV NFD+P+  + Y+HR+GRTGRAG KG A+SLV   D     ++
Sbjct: 304 ATDVAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGKKGIAISLVEAHDHMLLGKI 363

Query: 366 EAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFYQN 425
             ++ + ++  ++  L    +    +Q    +       K K    S+ A PR K  +++
Sbjct: 364 SRYVNEPLKARIIEELRPTTRAPSEKQNGKPSRKVLAKRKEKKEKDSEAAKPRVKKRHRD 423