Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., ATP-dependent RNA helicase SrmB from Alteromonas macleodii MIT1002

 Score =  270 bits (691), Expect = 5e-77
 Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 9/416 (2%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F++L LD  L    A   F+  T IQ+  IP  + GRD+LAS+ TG+GKT AF+LP  
Sbjct: 1   MTFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
              L          R LIL PTRELA QVY +  ++         +ITGG N+    + L
Sbjct: 61  QFLLDYPRRQPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYGTDKETL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
           ++    +VATPGRL +H++  +     +E L+LDEADRMLD+GF+  + +I   A+ R+ 
Sbjct: 121 SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRK- 179

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           Q L+FSATL+   V   A ++LN P+ I      +E   I Q ++L D ++HK+ALL  I
Sbjct: 180 QNLLFSATLEGKGVKTFAHDILNNPEVIEANPSRKEKNKIHQWYHLADDMNHKQALLVNI 239

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           L        ++F  TR     L + L   ++    L G + Q +R   + +F+     IL
Sbjct: 240 LKQETTTSAVVFVKTRERLQMLKDFLASKDIPVCWLQGEMPQDKRIAALARFKSGEVPIL 299

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           + TDVA+RG+D+P V+HVINFDMP+  + YVHR+GRTGRAG KG A+SLV   D++   +
Sbjct: 300 LATDVAARGIDVPNVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLVEAHDFDMVAK 359

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDK 420
              ++ + ++  V+         L+P+   PK  P ++  KAK  +K+ KA P+ K
Sbjct: 360 TARYMGEPLKARVI-------DELRPKNKTPKIGPKKKKVKAKDKAKA-KAKPKKK 407