Pairwise Alignments

Query, 306 a.a., peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 218 a.a., putative L,D-transpeptidase YbiS from Xanthobacter sp. DMC5

 Score = 63.2 bits (152), Expect = 5e-15
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 55  DIGFLALMAANRGVDPFLPQEGFVISIPAKIILPKVAYE-----GIVINLAELRLYYFRP 109
           D   LA+ AA  G +P+      +  +  + +   VAY      G V+     R  Y   
Sbjct: 35  DAMHLAMYAALEG-EPYPVPAVDLSEVDPRFLRQSVAYRTEHLPGTVVVDPGQRYAYLVG 93

Query: 110 NEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGP 169
             G+   + VG+G+           +  K ++P WTP A++      +       +  GP
Sbjct: 94  ENGRAVRYGVGVGKEEAFNFRGAALVGRKAQWPRWTPTANMISREPDRYGRFAGGLVGGP 153

Query: 170 ENPLGDYAMRLAYGSGE---YLIHGTNKDFGVGMRVSAGCIRMDPKDIEWLYQQVERGEK 226
            NPLG  A+ L Y  G    Y +HGT + + +G  VS+GCIR+  +DI  LY++V  G +
Sbjct: 154 NNPLGPRALYL-YRDGVDTLYRLHGTTEPWTIGTMVSSGCIRLMNQDIIDLYRRVPIGSR 212

Query: 227 VRII 230
           V ++
Sbjct: 213 VVVL 216