Pairwise Alignments

Query, 306 a.a., peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  224 bits (572), Expect = 2e-63
 Identities = 119/286 (41%), Positives = 176/286 (61%), Gaps = 11/286 (3%)

Query: 19  NAAVFDLPIEGSSIVGNTQYHKVEKGET--LADIAKKYDIGFLALMAANRGVDPFLPQEG 76
           +A  + LP +GS ++G  Q   V +G T  L   A +Y +G   ++ AN GVD FLP+ G
Sbjct: 23  SAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSNMLEANPGVDTFLPKGG 82

Query: 77  FVISIPAKIILPKVAYEGIVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPV-MQTSI 135
            V++IP ++ILP   +EGI+IN AE+RLYY+      V + P+GIG++G+DTP+   T +
Sbjct: 83  TVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKV 142

Query: 136 SSKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGPENPLGDYAMRLAYGSGEYLIHGTNKD 195
             K+  PTWTP A +  EY+A G  LP VVPAGP+NP+G YA+   Y    Y IHGTN +
Sbjct: 143 ERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYAL---YIGRLYAIHGTNAN 199

Query: 196 FGVGMRVSAGCIRMDPKDIEWLYQQVERGEKVRIINEPIKVALEPDRSVFIEVHEPLTRS 255
           FG+G+RVS GC+R+   DI++L++ V  G +V+ I+EP+K   EPD S +IEVH PL+ +
Sbjct: 200 FGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTT 259

Query: 256 NG-VKKNLVVPEELSWWL----QEHKISDAKARAAVLAQNGVPVEI 296
               +    VP  L+  +     E  +     + AV  ++G+PV +
Sbjct: 260 EAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMPVRL 305