Pairwise Alignments

Query, 306 a.a., peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., putative L,D-transpeptidase YcfS from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  278 bits (712), Expect = 9e-80
 Identities = 146/302 (48%), Positives = 205/302 (67%), Gaps = 8/302 (2%)

Query: 2   WWKVWVIGCALAVSWSINAAVFDLPIEGSSIVGNTQYHKVEK-GETLADIAKKYDIGFLA 60
           W   +    A+A++    A  + LP  GS +VG  ++H VE  G +L  IAKKY++GFLA
Sbjct: 9   WLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLA 68

Query: 61  LMAANRGVDPFLPQEGFVISIPAKIILPKVAYEGIVINLAELRLYYFRPNEGKVHIFPVG 120
           L+ AN GVDP++P+ G V++IP + +LP    EGIVIN+AELRLYY+ P +  V ++P+G
Sbjct: 69  LLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIG 128

Query: 121 IGRIGRDT--PVMQTSISSKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGPENPLGDYAM 178
           IG++G DT  P M T++S KR  PTWTP A+IR  YKA+GI+LP VVPAGP+NP+G +A+
Sbjct: 129 IGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGPDNPMGHHAI 188

Query: 179 RLAYGSGEYLIHGTNKDFGVGMRVSAGCIRMDPKDIEWLYQQVERGEKVRIINEPIKVAL 238
           RLA   G YL+HGTN DFG+GMRVS+GCIR+   DI+ L+ QV  G KV IIN PIKV+ 
Sbjct: 189 RLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSA 248

Query: 239 EPDRSVFIEVHEPLTRSNGVKKNLVVPEELSWWLQEHK---ISDAKARAAVL-AQNGVPV 294
           EP+ +  +EVH+PL+        L +P  L+  +Q  K    +DA+    V+  ++G+PV
Sbjct: 249 EPNGARLVEVHQPLSEKIDDDPQL-LPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPV 307

Query: 295 EI 296
           ++
Sbjct: 308 DV 309