Pairwise Alignments

Query, 306 a.a., peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., L,D-transpeptidase from Escherichia coli ECRC101

 Score =  224 bits (571), Expect = 2e-63
 Identities = 120/286 (41%), Positives = 178/286 (62%), Gaps = 11/286 (3%)

Query: 20  AAVFDLPIEGSSIVGNTQYHKVEKGET--LADIAKKYDIGFLALMAANRGVDPFLPQEGF 77
           A  + LP EGS +VG +    V    T  L   A +Y  G   ++ AN G D FLP+ G 
Sbjct: 22  AVTYPLPPEGSRLVGQSLTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGS 81

Query: 78  VISIPAKIILPKVAYEGIVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTP-VMQTSIS 136
            ++IP ++ILP    +GIV+N+AE+RLYY+ P+   V +FP+GIG+ GR+TP    T++ 
Sbjct: 82  QLTIPQQLILPVTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVE 141

Query: 137 SKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGPENPLGDYAMRLAYGSGEYLIHGTNKDF 196
            K++ PTWTP  + R+EY  +G  LP  VPAGP+NP+G YA+   Y    Y IHGTN +F
Sbjct: 142 RKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAI---YIGRLYAIHGTNANF 198

Query: 197 GVGMRVSAGCIRMDPKDIEWLYQQVERGEKVRIINEPIKVALEPDRSVFIEVHEPLTRSN 256
           G+G+RVS GCIR+   DI++L+  V  G +V+II++P+K   EPD S ++EVHEPL+R+ 
Sbjct: 199 GIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSKWLEVHEPLSRNR 258

Query: 257 GV-----KKNLVVPEELSWWLQEHKISDAKARAAVLAQNGVPVEIA 297
                  K  L V   L  ++   ++   +A AA+  ++G+PV+I+
Sbjct: 259 AEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQIS 304