Pairwise Alignments

Query, 306 a.a., peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., L,D-transpeptidase family protein from Dickeya dianthicola ME23

 Score =  222 bits (565), Expect = 1e-62
 Identities = 116/298 (38%), Positives = 181/298 (60%), Gaps = 11/298 (3%)

Query: 7   VIGCALAVSWSINAAVFDLPIEGSSIVGNTQYHKVEKGET--LADIAKKYDIGFLALMAA 64
           ++  A A S +  A V+ LP   S +VG      +    T  L   A +Y +G   L+ A
Sbjct: 9   LVVAAAAFSQTALAVVYPLPAPNSRLVGENIQVTIPSDSTDALEHFAAQYQMGLSNLLEA 68

Query: 65  NRGVDPFLPQEGFVISIPAKIILPKVAYEGIVINLAELRLYYFRPNEGKVHIFPVGIGRI 124
           N G+D +LP+ G  +++P ++ILP    EGIVIN AE+RLYY+      V + P+GIG++
Sbjct: 69  NPGIDVYLPKPGSTMTVPQQLILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGQL 128

Query: 125 GRDTPV-MQTSISSKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGPENPLGDYAMRLAYG 183
           G+DTP+   TS+  K++ PTWTP A++  EY A+G  LP V PAGP+NP+G YA+   Y 
Sbjct: 129 GKDTPINWVTSVQRKKERPTWTPTAAMHAEYAARGEFLPQVYPAGPDNPMGLYAL---YI 185

Query: 184 SGEYLIHGTNKDFGVGMRVSAGCIRMDPKDIEWLYQQVERGEKVRIINEPIKVALEPDRS 243
              Y IHGTN +FG+G+RVS GC+R+  KDI++L+  V  G +V+ INEP+K  +EPD S
Sbjct: 186 GNLYAIHGTNANFGIGLRVSHGCVRLRDKDIKYLFDHVPVGTRVQFINEPVKATVEPDGS 245

Query: 244 VFIEVHEPLTR-----SNGVKKNLVVPEELSWWLQEHKISDAKARAAVLAQNGVPVEI 296
            ++E+H PL+R     ++     L +   ++  L +  +S++    A+ ++ G+P ++
Sbjct: 246 RYVEIHNPLSRTEEEFNSETPAPLKLTPVVTKVLADASVSESAVNQALQSRMGMPTKV 303