Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., deoxyribodipyrimidine photolyase from Pseudomonas simiae WCS417

 Score =  369 bits (946), Expect = e-106
 Identities = 207/479 (43%), Positives = 278/479 (58%), Gaps = 23/479 (4%)

Query: 1   MRLVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQ 60
           M L+W R DLR  DNTAL AA   G P+AA+Y+ TP+QW  H  AP + D   R L +L 
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQRG-PIAAVYLITPQQWQSHDDAPCKVDFWLRNLQDLS 59

Query: 61  QELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSE 120
           + L ALN+PL  +  A +  A   +S+L + L+   V  N +Y + E +RD    + L  
Sbjct: 60  KTLGALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHESRRDAAVSKALEA 119

Query: 121 QGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPSA 180
            G+ +  + D+    PGSV TK G +F+VF+ F++   T     +    R VA    P A
Sbjct: 120 DGVTFHRYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSAL---PRMVA---APKA 173

Query: 181 LAEL------VWHPEQAFDYPRIDSTP--WAADFETVRAQLRDFCRERVQDYHQARDFPA 232
            A L      V +  + F  P  DS    W A  +  R +L  F  +++  Y   RDFPA
Sbjct: 174 QAPLKLKSDPVPNTVEGFAPPS-DSLRALWPAGEDEARRRLDAFADQQISYYKDERDFPA 232

Query: 233 REGTSSLSPYLAIGVLSARQCVARLYH----ESSMGELSEGAQVWLSELIWREFYQHLVA 288
           + GTS LS YLA GV+S RQC+         E   G+L  GA  W++EL+WREFY+H++ 
Sbjct: 233 KPGTSQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDL--GAITWINELLWREFYKHILV 290

Query: 289 IEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMI 348
             P +S+ R F      + W N  +    W E +TG PI+DAAMRQL +TGWMHNRLRM+
Sbjct: 291 GYPRVSRHRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMV 350

Query: 349 VASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGE 408
           VA FLTK+L IDWR GER+FM  LIDGD AANNGGWQW +STG D  PYFRIF+P+SQ E
Sbjct: 351 VAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSE 410

Query: 409 KFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL-YPARLVDHKQEREVTLRLYKT 466
           KFD  G FI+ W+PEL +++   +H P     +  V  YP  +VD K+ RE  L  +++
Sbjct: 411 KFDAEGVFIKHWLPELAALNKKDVHNPEAAGGLFGVADYPRSIVDLKKSRERALAAFRS 469