Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., Deoxyribodipyrimidine photolyase (EC 4.1.99.3) from Variovorax sp. SCN45

 Score =  320 bits (821), Expect = 5e-92
 Identities = 196/486 (40%), Positives = 268/486 (55%), Gaps = 28/486 (5%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
           L+WFRRDLR  DN AL  AL +   V  +++              + + I   L EL+ E
Sbjct: 16  LMWFRRDLRVDDNAALYRALRACRQVVCVFVFDKAILDPLPTVDRRVEFIRESLLELEAE 75

Query: 63  LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQG 122
           L AL   L  +       AA  +  LA  L+   V ANRD E D  +RD      L+  G
Sbjct: 76  LRALGGALIVRH----GLAAQEIPALAHDLDVQAVFANRDDEPDALERDAKVFGALANAG 131

Query: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPV-----ALWNV 177
           + +  + D  V     V TK G+ + VFTP+KRAWL       + K+ PV     AL   
Sbjct: 132 VTFHTYKDSTVFDRDEVMTKTGQPYTVFTPYKRAWLAKVDSFFL-KSYPVRSHADALVPP 190

Query: 178 PSALAE-LVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGT 236
           P A  E +    E  F+   + +               DF  ER+  Y +AR+FPA  G 
Sbjct: 191 PEAYREPMPSLGELGFEKSNLSTLEIPTGTRGAGTLFEDFF-ERIDRYDEARNFPAVRGP 249

Query: 237 SSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNL--- 293
           S +  +L  G +S RQ +A L H+ S+ + + GA  WLSELIWR+FY  ++A  P +   
Sbjct: 250 SYMGVHLRFGTVSIRQ-MASLAHQLSL-QGNAGAATWLSELIWRDFYFQILAHFPYVHTG 307

Query: 294 SKSRDFVEWGARLEWWND---NEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVA 350
            +S+ F     +++W +    ++ F+ WC+G+TGYP+VDAAM Q+NQ+G+MHNRLRM+VA
Sbjct: 308 GESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLRMVVA 367

Query: 351 SFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
           SFL KDL +DWR GE YF   L D + A+NNGGWQW +S+GCD QPYFRIFNPV+Q E+F
Sbjct: 368 SFLCKDLGLDWRRGEAYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQSERF 427

Query: 411 DPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--------SVLYPARLVDHKQEREVTLR 462
           DP G FIRR++P+L  +S+A IH PW    V            YP  +VDH + RE TL+
Sbjct: 428 DPEGKFIRRYLPQLAGLSNAAIHAPWQASPVELEAAGIKLGETYPKPVVDHAEAREKTLQ 487

Query: 463 LYKTAK 468
            Y  A+
Sbjct: 488 RYGVAR 493