Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., Deoxyribodipyrimidine photolyase (EC 4.1.99.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  310 bits (793), Expect = 9e-89
 Identities = 198/489 (40%), Positives = 256/489 (52%), Gaps = 27/489 (5%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQAD----LIWRRLAE 58
           L+WFRRDLR+ DN AL  AL     V  +++   +         ++AD     I   L E
Sbjct: 8   LMWFRRDLRAEDNAALYHALKVCRRVWCVFVFDTDILDDLQGRGLRADRRVEFIRESLVE 67

Query: 59  LQQELAALNVPLFYQQVA---DFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQ 115
           L + L AL      + V        AA A+  LA+ L    V AN D E    +RD    
Sbjct: 68  LDERLRALGREHGVEGVGLIVRHAPAARAIPALAQQLGVQAVFANHDDEPAALERDARVF 127

Query: 116 QLLSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALW 175
             L+  GI+  +  D  +     V T+ G  F VFTP+K AWL    P  + K  PVA +
Sbjct: 128 GDLAHAGILLHSHKDHVIFERREVLTQAGHAFGVFTPYKNAWLKALTPFHL-KAYPVARY 186

Query: 176 N------VPSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARD 229
                   P   A +    +  F+   +             A   DF  +R+  Y  AR+
Sbjct: 187 AGTLAGVPPEHAAPVPSLSDIGFEPTNLAQLALPPGASGAHALFEDFV-DRIDRYEGARN 245

Query: 230 FPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAI 289
           FPA +G S LS +L  G +S R   +  Y     G    GA  WLSEL+WR+FY  ++A 
Sbjct: 246 FPAVKGPSYLSAHLRFGTISIRHLASVAYQMHLQG--MAGASTWLSELVWRDFYHQVLAN 303

Query: 290 EPNLSKSRDFVEWGA-RLEWWND-NEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
            P++       E+ A + E      E+F  WCEG+TGYP+VDAAM Q+NQTG+MHNRLRM
Sbjct: 304 FPHVVDKAFKPEYDAIKFEHGKHAREQFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRM 363

Query: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
           +VASFL KDL + W+WGERYF   LID D AANNGGWQW +S+GCD QP+FRIFNPV+Q 
Sbjct: 364 VVASFLVKDLGLHWQWGERYFADHLIDFDLAANNGGWQWASSSGCDAQPWFRIFNPVTQS 423

Query: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPW-----TYPAVNSVL---YPARLVDHKQEREV 459
           EKFDP+G FIRR++P+L  +  A IH PW        A   VL   YP  +VDH   RE 
Sbjct: 424 EKFDPHGKFIRRYLPQLAGLPDAAIHAPWKANEIELAAAGLVLGEGYPPPIVDHAVARER 483

Query: 460 TLRLYKTAK 468
           TL  Y   K
Sbjct: 484 TLLRYAVVK 492