Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Deoxyribodipyrimidine photolyase (EC 4.1.99.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  435 bits (1118), Expect = e-126
 Identities = 233/474 (49%), Positives = 290/474 (61%), Gaps = 16/474 (3%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDP-VAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQ 61
           LVWFRRDLR  DN AL AA       V A+YI+TP QW  H +AP QA  I  +L  LQ 
Sbjct: 5   LVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQT 64

Query: 62  ELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQ 121
            LA   +PL + +VADF A+   V  + +  + + +  N  YE +E+QRD   ++ L   
Sbjct: 65  ALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPS- 123

Query: 122 GIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQ---PPVIG--KNRPVALWN 176
            +I   FDD  +L PG+V T   E +KVFTPFK AWL   +   PP +   K R     +
Sbjct: 124 -VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGALS 182

Query: 177 VPSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGT 236
            P     L + P+QAFD     +  +  +   V AQLR FC +   +Y   RDFPA +GT
Sbjct: 183 TPLTPVSLNY-PQQAFD-----AALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGT 236

Query: 237 SSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296
           S LS  LA G LS RQC+ RL  E           VWL+ELIWREFY+HL+   P L K 
Sbjct: 237 SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356
           + F+ W  R+ W  +   FQ W +G+TGYPIVDAAMRQLN TGWMHNRLRMI ASFL KD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416
           L IDWR GERYFMS+LIDGD AANNGGWQW ASTG D  PYFRIFNP +QGE+FD +G+F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468
           IR+W+P LR +    IH+PW +     V+  YP  +V+HKQ R  TL  Y+ A+
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAAR 470