Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., deoxyribodipyrimidine photo-lyase from Erwinia tracheiphila SCR3

 Score =  441 bits (1133), Expect = e-128
 Identities = 236/474 (49%), Positives = 300/474 (63%), Gaps = 14/474 (2%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDP-VAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQ 61
           LVW R DLR  DNTAL AA    D  V A++IATP+QWH H +AP QA  I++ L ++QQ
Sbjct: 5   LVWLRNDLRIHDNTALHAACRDSDARVLALFIATPQQWHSHVMAPRQAAFIYQSLQDVQQ 64

Query: 62  ELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQ 121
            LA   +PL + Q  DF A+   ++   +  N  ++  N  YE++E+QRD   ++ LSE 
Sbjct: 65  SLAEKGIPLHFLQCRDFDASVSELASFCQAHNIERMFYNYQYEVNERQRDARVERALSEL 124

Query: 122 GIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPSAL 181
            II   FDD  +L PGSV T  GE +KVFTPF +A +   +  V     P  L  VP A 
Sbjct: 125 DIISQGFDDSLLLAPGSVLTGSGEMYKVFTPFSKALVRRLKEGV-----PECL-PVPKAR 178

Query: 182 --AELVWHPE-QAFDYPR--IDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGT 236
             A L   P  + FDYP    D   + A       +LR FC++   DY Q RD PA +GT
Sbjct: 179 ENAPLKKTPTLKPFDYPSEAFDDQLFPAGEAAALKRLRAFCQQPAADYPQQRDIPAVDGT 238

Query: 237 SSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296
           S LS YLA GVLS RQC+ RL  E + G  +    VWL+ELIWREFY+HL+   P+L + 
Sbjct: 239 SRLSVYLATGVLSPRQCLNRLLREHADGLDNSRIFVWLNELIWREFYRHLLVAWPSLCRH 298

Query: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356
           + F+ W  +++W  +    + W +GKTGYP+VDAAMRQLN  GWMHNRLRMIVASFL KD
Sbjct: 299 QPFIGWTEKVKWQQNGRHLEAWQQGKTGYPVVDAAMRQLNALGWMHNRLRMIVASFLVKD 358

Query: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416
           L IDWR GERYFMS+LIDGD AANNGGWQW AS G D  PYFRIFNP +QGE+FD  G F
Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASCGTDAAPYFRIFNPTTQGERFDEEGAF 418

Query: 417 IRRWVPELRSVSSAYIHQP--WTYPAVNSVLYPARLVDHKQEREVTLRLYKTAK 468
           IR+W+PEL++V   +IHQP  W      S+ YP  +VDHK+ R+ TL  ++ A+
Sbjct: 419 IRQWLPELKAVPKQHIHQPQAWAKKHGVSLDYPQPIVDHKEARKTTLAAFEAAR 472