Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., deoxyribodipyrimidine photolyase, FAD-binding from Escherichia coli BL21

 Score =  449 bits (1155), Expect = e-131
 Identities = 240/471 (50%), Positives = 297/471 (63%), Gaps = 11/471 (2%)

Query: 3   LVWFRRDLRSFDNTALTAAL-NSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQ 61
           LVWFR+DLR  DN AL AA  NS   V A+YIATP QW  H+++P QA+LI  +L  LQ 
Sbjct: 5   LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64

Query: 62  ELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQ 121
            LA   +PL +++V DF A+   V Q+    + T +  N  YE++E+ RD   ++ L  +
Sbjct: 65  ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL--R 122

Query: 122 GIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPSAL 181
            ++   FDD  +LPPG+V T   E +KVFTPFK AWL   +    G    VA   V S+ 
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE---GMPECVAAPKVRSS- 178

Query: 182 AELVWHPEQAFDYPR--IDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239
             +   P    +YPR   D+  +  + +   AQLR FC+    +Y Q RDFPA EGTS L
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 240 SPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDF 299
           S  LA G LS RQC+ RL  E           VWLSELIWREFY+HL+   P+L K   F
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSELIWREFYRHLMTYYPSLCKHCPF 298

Query: 300 VEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHI 359
           + W  R++W ++    Q W EGKTGYPIVDAAMRQLN TGWMHNRLRMI ASFL KDL I
Sbjct: 299 IAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLI 358

Query: 360 DWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRR 419
           DWR GERYFMS+LIDGD AANNGGWQW ASTG D  PYFRIFNP +QGEKFD  G+FIRR
Sbjct: 359 DWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRR 418

Query: 420 WVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468
           W+PELR V    +H+PW +     V+  YP  +VDHK+ R  TL  Y+ A+
Sbjct: 419 WLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAR 469