Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Cryptochrome-like protein cry2 from Alteromonas macleodii MIT1002

 Score =  120 bits (300), Expect = 1e-31
 Identities = 85/263 (32%), Positives = 122/263 (46%), Gaps = 28/263 (10%)

Query: 213 LRDFCRERVQDYHQARDFP--AREGTSSLSPYLAIGVLSARQCVARLYHESSMGEL---- 266
           L+DF   R Q YHQ    P  AR   S LSPYLA G LS +Q    + H+    +L    
Sbjct: 237 LKDFFDARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNS 296

Query: 267 -----SEGAQVWLSELIWREFY------QHLVAIEPNLSKSRDFVEWGARLEWWNDNEKF 315
                S       S L W   +      +H +   P  S   +F      ++      +F
Sbjct: 297 DRKQWSRALAALTSRLHWHCHFIQKFESEHSIEWRPMNSGYENF----PFIDGPEAERRF 352

Query: 316 QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDG 375
            LW  G TGYP+VDA MR L  TG+++ R+R +V SFL   L++ W     Y  ++ +D 
Sbjct: 353 YLWTMGLTGYPLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDF 412

Query: 376 DYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQP 435
           +   +    Q  AS    G    R++NP +Q  K DP G FI++WVPEL  + S  +H P
Sbjct: 413 EPGIHYPQIQMQASV--TGIHTVRLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAP 470

Query: 436 WTYPAVNSVLYPARLVDHKQERE 458
              P +      A+++D   ER+
Sbjct: 471 HLLPPLE-----AQMLDFDVERD 488



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRL----AE 58
           ++WF+RDLR  D+  L  A+   + +  ++   P      H+       I + +    A+
Sbjct: 12  VIWFKRDLRLRDHEPLYRAVEKNENILPLFCWEPSLIADPHMDMRHWQFIQQSIDDINAQ 71

Query: 59  LQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLN-ATQVLANRDYELDEQQRDQLAQQL 117
           L  +   L +        +F A   A+S +         V  NRD  +    + +    +
Sbjct: 72  LPSDARLLTLHCEVIDALEFIAQHYAISAVRSYQEIGLSVTHNRDISVSNYLKKKKINHI 131

Query: 118 LSEQGII 124
            S+ G +
Sbjct: 132 ESQYGAV 138