Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., DNA photolyase from Agrobacterium fabrum C58

 Score =  278 bits (710), Expect = 4e-79
 Identities = 184/497 (37%), Positives = 256/497 (51%), Gaps = 60/497 (12%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYI---------ATPEQWHQHHLAPIQADLIW 53
           +VWFR+DLR  DN AL AA+  G PV  +YI            E W  H LA + + L  
Sbjct: 9   IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPLGGAQEWWLHHSLAALSSSL-- 66

Query: 54  RRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQL 113
                   E A   + L     A   A  +    +++T  A  V+ NR Y+      D+ 
Sbjct: 67  --------EKAGGRLVL-----ASGDAERILRDLISET-GADTVVWNRRYDPTGMATDKA 112

Query: 114 AQQLLSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVA 173
            +Q L + G+   +F  + +  P  ++TK G  ++V+TPF RA        + G + P A
Sbjct: 113 LKQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRA--------LEGSDEPHA 164

Query: 174 LWNVPSAL-AELVW-HPEQAFDYPRIDSTP-WAADFETVRA--------QLRDFCRERVQ 222
             + P +L A  VW   E+  ++  + + P WA DF  +          +L DF    ++
Sbjct: 165 PADPPKSLTAPKVWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALK 224

Query: 223 DYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHES---SMGELSEGAQVWLSELIW 279
            Y + RDFPA+  TS LSP+LA G +S     A ++H +   S    S     +  E++W
Sbjct: 225 GYEEGRDFPAKPATSLLSPHLAAGEISP----AAVWHATKGLSRHIASNDISRFRKEIVW 280

Query: 280 REFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTG 339
           REF  HL+   P L +      + A   W +D + F+ W  G TGYPIVDA MRQL Q G
Sbjct: 281 REFCYHLLFHFPELGEKNWNDSFDA-FSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHG 339

Query: 340 WMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFR 399
            MHNR+RMIVASFL K L IDWR GE++F   L+D D A+N   WQW A +G D  P+FR
Sbjct: 340 TMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFR 399

Query: 400 IFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP--AVNSV------LYPARLV 451
           IFNP+ QGEKFD +GD++RR+VPEL  +   YIH+P+  P  A+          YP  +V
Sbjct: 400 IFNPILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIV 459

Query: 452 DHKQEREVTLRLYKTAK 468
           DH + RE  L  Y   K
Sbjct: 460 DHGKARERALAAYAAVK 476